Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029923.1

Orthogroup ID

OG0003800

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2269

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

gaaattggattgttacgtggggagaatcgccaaggccacgtgcctcaccgtcatcaccaccgcggcacgcgacatgatcgacgcggcctgggcctcgcggtggcgatcatgcacgagaggagcctgggggagcagtcccactgggccccgtacctggcggtgttgccggagcaggagcccattccgttggtctggacggcggaggagctgctgagagggacggagctgcacgagacggtgaaggaagacagaggagtgatgttggaggactggaaagagagcattgagccattgcaggaccaaattgggacccaatttgagagctttttcgggtttgaggagtacctggcagcaagaacgctgattgcttctaggtcttttcagattgatgatcacgaccacggagtcggaatggttcctttggctgacattgaattcgacccgactgaaaatagtggtagcgaagaaggcaatgagtctactactagtacaacttccagtcttagtcctactactggtgctagtactactgatgatgtagcttctagtgctactgaagatggtgatttggagatggttatggtcaaagatgtcaaagttggagctgaggtcttcaacacatacggcttattgggcaatgctgcacttcttcatagatatgggtttacagagcctgataatccatttgacattgtgaatatcgacttggaacttgtacttcagtggagtgcgtctttgttttctggccagcatcgtagagcgaggctatctttgtggagaagattaggatactccggatgtgccacccacaactcggaatattttgagatttcgtttaatggggaacccccaaatgagctgctgcttttgttgtacataatgttgttacaacaggatgcatatgataagattgatctggctctagcaaccacgggaaattccaatgggcatatggacggcattttatcagataaaactgaaaaattgtcggacataactgctgagttcagtgaagcggtgttgttgacaaatactatttgcaatgctctcttgtcccttgcagatatgcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

357

Amino Acids

39.69

Weight (kDa)

4.66

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56570 AT3G56570
fragaria_vesca	FvH4_1g25860
malus_domestica	MD00G1030500.v1.1
prunus_persica	Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1
pyrus_communis	pycom520g01270
rosa_chinensis	RchiOBHm_Chr3g0485001
rosa_laevigata	RLG00000023178
rosa_multiflora	Rmu_sc0006040.1_g000023 Rmu_sc0008046.1_g000001 Rmu_sc0009462.1_g000004 Rmu_sc0013239.1_g000002 Rmu_sc0029923.1_g000001 Rmu_sc0034567.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397270
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh3AG265400 Rh3BG300900 Rh3BG301000 Rh3CG298800 Rh3CG299300 Rh3DG294700 Rh3DG295100
rosa_wichuraiana	Rw0G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	479
AccII	CGCG	4 cut(s)	63, 70, 84, 98
AccIII	TCCGGA	1 cut(s)	794
AciI	CCGC	8 cut(s)	61, 63, 84, 98, 158, 200, 1016, 1069
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	2 cut(s)	434, 937
AcuI	CTGAAG	2 cut(s)	576, 704
AcvI	CACGTG	1 cut(s)	40
AfaI	GTAC	6 cut(s)	152, 344, 490, 526, 717, 875
AfiI	CCNNNNNNNGG	4 cut(s)	100, 154, 515, 814
AgsI	TTSAA	2 cut(s)	434, 616
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	4 cut(s)	87, 123, 153, 345
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
AluBI	AGCT	6 cut(s)	208, 226, 324, 542, 605, 859
AluI	AGCT	6 cut(s)	208, 226, 324, 542, 605, 859
Alw26I	GTCTC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	674
Aor13HI	TCCGGA	1 cut(s)	794
AoxI	GGCC	5 cut(s)	34, 85, 91, 144, 745
ApaI	GGGCCC	1 cut(s)	148
ApeKI	GCWGC	6 cut(s)	208, 226, 350, 641, 859, 862
ApoI	RAATTY	2 cut(s)	434, 937
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspS9I	GGNCC	5 cut(s)	91, 144, 145, 298, 309
AsuHPI	GGTGA	4 cut(s)	38, 47, 250, 575
AvaII	GGWCC	2 cut(s)	298, 309
BaeGI	GKGCMC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	747
BanII	GRGCYC	2 cut(s)	148, 180
BauI	CACGAG	2 cut(s)	113, 230
BbrPI	CACGTG	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	252, 604
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	6 cut(s)	195, 213, 362, 628, 846, 849
BccI	CCATC	2 cut(s)	554, 568
BceAI	ACGGC	3 cut(s)	213, 640, 973
BciT130I	CCWGG	4 cut(s)	89, 125, 155, 347
BciVI	GTATCC	1 cut(s)	782
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	227
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	5 cut(s)	372, 486, 522, 546, 923
BfuI	GTATCC	1 cut(s)	782
BisI	GCNGC	8 cut(s)	64, 85, 209, 227, 351, 642, 860, 863
BlsI	GCNGC	8 cut(s)	65, 86, 210, 228, 352, 643, 861, 864
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	4 cut(s)	89, 125, 155, 347
Bme18I	GGWCC	2 cut(s)	298, 309
BmgT120I	GGNCC	5 cut(s)	91, 144, 145, 298, 309
BmiI	GGNNCC	8 cut(s)	122, 146, 147, 177, 310, 311, 417, 846
BmrFI	CCNGG	4 cut(s)	89, 125, 155, 347
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	760, 886
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	252, 604
Bpu10I	CCTNAGC	1 cut(s)	606
BsaAI	YACGTR	2 cut(s)	17, 40
BsaJI	CCNNGG	6 cut(s)	31, 61, 88, 124, 400, 930
BsaWI	WCCGGW	1 cut(s)	794
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 154, 515, 814
Bse1I	ACTGG	4 cut(s)	146, 275, 498, 520
Bse3DI	GCAATG	4 cut(s)	290, 478, 643, 1048
BseAI	TCCGGA	1 cut(s)	794
BseBI	CCWGG	4 cut(s)	89, 125, 155, 347
BseDI	CCNNGG	6 cut(s)	31, 61, 88, 124, 400, 930
BseGI	GGATG	2 cut(s)	803, 901
BseLI	CCNNNNNNNGG	4 cut(s)	100, 154, 515, 814
BseMI	GCAATG	4 cut(s)	290, 478, 643, 1048
BseMII	CTCAG	3 cut(s)	203, 597, 993
BseNI	ACTGG	4 cut(s)	146, 275, 498, 520
BseRI	GAGGAG	4 cut(s)	133, 218, 267, 353
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	6 cut(s)	195, 213, 362, 628, 846, 849
BsgI	GTGCAG	2 cut(s)	212, 627
Bsh1236I	CGCG	4 cut(s)	63, 70, 84, 98
BshFI	GGCC	5 cut(s)	36, 87, 93, 146, 747
BsiSI	CCGG	2 cut(s)	167, 795
BslFI	GGGAC	4 cut(s)	121, 232, 322, 1039
BslI	CCNNNNNNNGG	4 cut(s)	100, 154, 515, 814
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	4 cut(s)	121, 232, 322, 1039
BsnI	GGCC	5 cut(s)	36, 87, 93, 146, 747
Bsp120I	GGGCCC	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	148, 180
Bsp13I	TCCGGA	1 cut(s)	794
Bsp1407I	TGTACA	1 cut(s)	873
Bsp143I	GATC	4 cut(s)	76, 105, 391, 913
BspACI	CCGC	8 cut(s)	61, 63, 84, 98, 158, 200, 1016, 1069
BspANI	GGCC	5 cut(s)	36, 87, 93, 146, 747
BspCNI	CTCAG	3 cut(s)	204, 598, 994
BspEI	TCCGGA	1 cut(s)	794
BspFNI	CGCG	4 cut(s)	63, 70, 84, 98
BspLI	GGNNCC	8 cut(s)	122, 146, 147, 177, 310, 311, 417, 846
BsrDI	GCAATG	4 cut(s)	290, 478, 643, 1048
BsrGI	TGTACA	1 cut(s)	873
BsrI	ACTGG	4 cut(s)	146, 275, 498, 520
BssECI	CCNNGG	6 cut(s)	31, 61, 88, 124, 400, 930
BssMI	GATC	4 cut(s)	76, 105, 391, 913
BssSI	CACGAG	2 cut(s)	113, 230
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	2 cut(s)	113, 230
Bst2UI	CCWGG	4 cut(s)	89, 125, 155, 347
Bst4CI	ACNGT	2 cut(s)	50, 238
BstAUI	TGTACA	1 cut(s)	873
BstBAI	YACGTR	2 cut(s)	17, 40
BstC8I	GCNNGC	2 cut(s)	68, 749
BstDEI	CTNAG	4 cut(s)	212, 503, 606, 1002
BstDSI	CCRYGG	3 cut(s)	61, 400, 930
BstF5I	GGATG	2 cut(s)	803, 901
BstFNI	CGCG	4 cut(s)	63, 70, 84, 98
BstKTI	GATC	4 cut(s)	79, 108, 394, 916
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	4 cut(s)	76, 105, 391, 913
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 468, 548, 633
BstNI	CCWGG	4 cut(s)	89, 125, 155, 347
BstSCI	CCNGG	4 cut(s)	87, 123, 153, 345
BstSLI	GKGCMC	1 cut(s)	148
BstUI	CGCG	4 cut(s)	63, 70, 84, 98
BstV1I	GCAGC	6 cut(s)	195, 213, 362, 628, 846, 849
BstV2I	GAAGAC	2 cut(s)	252, 604
BstXI	CCANNNNNNTGG	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	5 cut(s)	36, 87, 93, 146, 747
BtgI	CCRYGG	3 cut(s)	61, 400, 930
BtsCI	GGATG	2 cut(s)	803, 901
BtsIMutI	CAGTG	3 cut(s)	139, 728, 1015
Cac8I	GCNNGC	2 cut(s)	68, 749
CaiI	CAGNNNCTG	1 cut(s)	674
Cfr13I	GGNCC	5 cut(s)	91, 144, 145, 298, 309
Cfr42I	CCGCGG	1 cut(s)	64
CseI	GACGC	2 cut(s)	90, 720
Csp6I	GTAC	6 cut(s)	151, 343, 489, 525, 716, 874
CviAII	CATG	2 cut(s)	74, 109
CviQI	GTAC	6 cut(s)	151, 343, 489, 525, 716, 874
DdeI	CTNAG	4 cut(s)	212, 503, 606, 1002
DpnI	GATC	4 cut(s)	78, 107, 393, 915
DpnII	GATC	4 cut(s)	76, 105, 391, 913
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	745
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	148, 180
Eco47I	GGWCC	2 cut(s)	298, 309
Eco57I	CTGAAG	2 cut(s)	576, 704
Eco72I	CACGTG	1 cut(s)	40
EcoO109I	RGGNCCY	2 cut(s)	145, 309
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	4 cut(s)	87, 123, 153, 345
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	901
EcoT38I	GRGCYC	2 cut(s)	148, 180
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	2 cut(s)	77, 112
FaqI	GGGAC	4 cut(s)	121, 232, 322, 1039
FatI	CATG	2 cut(s)	73, 108
FauNDI	CATATG	2 cut(s)	901, 951
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	8 cut(s)	64, 85, 209, 227, 351, 642, 860, 863
FokI	GGATG	2 cut(s)	810, 908
FriOI	GRGCYC	2 cut(s)	148, 180
Fsp4HI	GCNGC	8 cut(s)	64, 85, 209, 227, 351, 642, 860, 863
FspBI	CTAG	5 cut(s)	372, 486, 522, 546, 923
GluI	GCNGC	8 cut(s)	64, 85, 209, 227, 351, 642, 860, 863
HaeIII	GGCC	5 cut(s)	36, 87, 93, 146, 747
HapII	CCGG	2 cut(s)	167, 795
HgaI	GACGC	2 cut(s)	90, 720
Hin1II	CATG	2 cut(s)	77, 112
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HinfI	GANTC	3 cut(s)	25, 405, 476
HpaII	CCGG	2 cut(s)	167, 795
HphI	GGTGA	4 cut(s)	38, 47, 250, 575
Hpy166II	GTNNAC	3 cut(s)	480, 666, 1026
Hpy188I	TCNGA	5 cut(s)	384, 410, 817, 970, 991
Hpy188III	TCNNGA	3 cut(s)	193, 395, 795
Hpy8I	GTNNAC	3 cut(s)	480, 666, 1026
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	235, 461
HpyCH4III	ACNGT	2 cut(s)	50, 238
HpyCH4IV	ACGT	2 cut(s)	16, 39
HpyCH4V	TGCA	7 cut(s)	112, 229, 295, 644, 899, 1041, 1061
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 468, 548, 633
HpyF3I	CTNAG	4 cut(s)	212, 503, 606, 1002
HpySE526I	ACGT	2 cut(s)	16, 39
Hsp92II	CATG	2 cut(s)	77, 112
KflI	GGGWCCC	1 cut(s)	309
Kpn2I	TCCGGA	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	76, 105, 391, 913
LmnI	GCTCC	7 cut(s)	120, 130, 169, 175, 205, 223, 602
Lsp1109I	GCAGC	6 cut(s)	195, 213, 362, 628, 846, 849
LweI	GCATC	2 cut(s)	760, 886
MaeI	CTAG	5 cut(s)	372, 486, 522, 546, 923
MaeII	ACGT	2 cut(s)	16, 39
MaeIII	GTNAC	2 cut(s)	12, 885
MalI	GATC	4 cut(s)	78, 107, 393, 915
MboI	GATC	4 cut(s)	76, 105, 391, 913
MboII	GAAGA	6 cut(s)	257, 476, 569, 604, 641, 792
MhlI	GDGCHC	2 cut(s)	148, 180
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	6 cut(s)	3, 303, 314, 434, 937, 983
MluNI	TGGCCA	1 cut(s)	747
MlyI	GAGTC	2 cut(s)	414, 485
MmeI	TCCRAC	4 cut(s)	243, 388, 580, 969
Mox20I	TGGCCA	1 cut(s)	747
Mph1103I	ATGCAT	1 cut(s)	901
MroI	TCCGGA	1 cut(s)	794
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	1 cut(s)	837
MslI	CAYNNNNRTG	1 cut(s)	657
Msp20I	TGGCCA	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	2 cut(s)	167, 795
MspR9I	CCNGG	4 cut(s)	89, 125, 155, 347
MvaI	CCWGG	4 cut(s)	89, 125, 155, 347
MvnI	CGCG	4 cut(s)	63, 70, 84, 98
MwoI	GCNNNNNNNGC	4 cut(s)	90, 468, 548, 633
NdeI	CATATG	2 cut(s)	901, 951
NdeII	GATC	4 cut(s)	76, 105, 391, 913
NlaIII	CATG	2 cut(s)	77, 112
NlaIV	GGNNCC	8 cut(s)	122, 146, 147, 177, 310, 311, 417, 846
NsiI	ATGCAT	1 cut(s)	901
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	8 cut(s)	65, 86, 210, 228, 352, 643, 861, 864
PleI	GAGTC	2 cut(s)	413, 484
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
PpsI	GAGTC	2 cut(s)	413, 484
Ppu21I	YACGTR	2 cut(s)	17, 40
PpuMI	RGGWCCY	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	309
Psp6I	CCWGG	4 cut(s)	87, 123, 153, 345
PspCI	CACGTG	1 cut(s)	40
PspGI	CCWGG	4 cut(s)	87, 123, 153, 345
PspN4I	GGNNCC	8 cut(s)	122, 146, 147, 177, 310, 311, 417, 846
PspOMI	GGGCCC	1 cut(s)	144
PspPI	GGNCC	5 cut(s)	91, 144, 145, 298, 309
PspPPI	RGGWCCY	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	674
RsaI	GTAC	6 cut(s)	152, 344, 490, 526, 717, 875
RsaNI	GTAC	6 cut(s)	151, 343, 489, 525, 716, 874
RseI	CAYNNNNRTG	1 cut(s)	657
SacII	CCGCGG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	837
SatI	GCNGC	8 cut(s)	64, 85, 209, 227, 351, 642, 860, 863
Sau3AI	GATC	4 cut(s)	76, 105, 391, 913
Sau96I	GGNCC	5 cut(s)	91, 144, 145, 298, 309
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	2 cut(s)	414, 485
ScrFI	CCNGG	4 cut(s)	89, 125, 155, 347
SduI	GDGCHC	2 cut(s)	148, 180
SfaNI	GCATC	2 cut(s)	760, 886
Sfr303I	CCGCGG	1 cut(s)	64
SgrBI	CCGCGG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	298, 309
SmiMI	CAYNNNNRTG	1 cut(s)	657
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	6 cut(s)	3, 303, 314, 434, 937, 983
SsiI	CCGC	8 cut(s)	61, 63, 84, 98, 158, 200, 1016, 1069
SspI	AATATT	1 cut(s)	821
SspMI	CTAG	5 cut(s)	372, 486, 522, 546, 923
StyD4I	CCNGG	4 cut(s)	87, 123, 153, 345
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	50, 238
TaiI	ACGT	2 cut(s)	19, 42
TaqI	TCGA	3 cut(s)	79, 438, 702
TasI	AATT	6 cut(s)	3, 303, 314, 434, 937, 983
TatI	WGTACW	4 cut(s)	488, 524, 715, 873
TauI	GCSGC	2 cut(s)	66, 87
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	837
Tru9I	TTAA	1 cut(s)	837
TscAI	CASTG	3 cut(s)	146, 728, 1015
TseI	GCWGC	6 cut(s)	208, 226, 350, 641, 859, 862
TspDTI	ATGAA	1 cut(s)	641
TspGWI	ACGGA	3 cut(s)	174, 236, 417
TspRI	CASTG	3 cut(s)	146, 728, 1015
VpaK11BI	GGWCC	2 cut(s)	298, 309
XapI	RAATTY	2 cut(s)	434, 937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	949
XmiI	GTMKAC	1 cut(s)	479
XspI	CTAG	5 cut(s)	372, 486, 522, 546, 923
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.