Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003800

Physical Location & Seq

Genomic Coordinates Reverse (-)

29847115 .. 29849024

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG265400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGAAATGGCGGCTCGGCGCGTGAGGGCTTTCAAGCGCTGGATGAAGCGGGAAGGCATCCAATGCAGCGACGCCCTCGAGCTGACCGTCTCCGCCACCCAAGGCCTCTCCATCACTGCCCTCGCCGACCTCCACGTCGGCGACGCCGTCGCCAGAATCCCCAAGGCCACGTGCCTCACCGTCATCACCACCGCCGCGCGCGACATGATCGACGCGGCCGGCCTCGACGGCAGCCTGGGCCTCGCGGTGGCGATCATGCACGAGAGGAGCCTGGGGGAGCAGTCCCACTGGGCCCCGTACCTGGCGGCGTTGCCGGAGCAGGAGGCCATCCCGTTGGTCTGGACGGCGGAGGAGGCGGAGGTGCTGCTGAGAGGGACGGAGCTGCACGAGACGGTGAAGGAAGACAGAGGAGTGATGCTGGAGGACTGGAAAGACAGCATTGAGCCATTGCAGGATCAAATTGGGTCGACCCAATTTGAGAGCTTTTTCGGGTTTGAGGAGTACTTGGCAGCAAGAACGCTGATTGCTTCTAGGTCTTTTCAGATTGATGATCACCACCACGGAGTCGGAATGGTTCCTTTGGCTGACATCTTTAATCACAAAACTGCAGCTGAGGATGTGCACTTGAACACCTCTGCTTCTACTGAAGGCAGTGAATCCGACACTGATAGTGGTAGCGAAGAAGGCAATGAATCTACTACTAGTACAACTTCCAGTCTTAGTCCTACTACTGGTGCTAGTACTACTGATGATGTAGCTTCTAGTGCTACTGACGATGGTGACGATGATGATTTGGAGATGGTTATGGTCAAAGATGTCAAACTTGGAGCTGAGGTCTTCAATACATATGGCTTATTGGGCAATGCTGCACTTCTTCATAGATATGGGTTTACAGAGCCTGATAATCCATTTGACATTGTGAATATCGACTTGGAACTTGTACTTCAGTGGAGTGCGTCTTTGTTTTCTGGCCAGCATCGTAGAGCGAGGCTATCTTTGTGGAGAAGATTAGGATACTCCGGATGTGCCACCCACAACTCGGAATATTTTGAGATTTCGTTTAATGGGGAACCCCCAAATGAGCTGCTGCTTTTGTTGTACATAATGTTGTTACAACAGGATGCATATGATAAGATTGATCTGGCTCTAGCAACCATGGGAAATTCCAATGGGCATATGGACGGCATTTTATCAGATAAAACTGAAAAATTGTCCGACATAACTGCTGAGTTCAGTGAAGCCGTGTTGTTGACAAATACTATTTGTAATGCTCTCTTGTCCCTTGCAGATATGCGGGAGAGCTTGTATGGTAAAAATTCATTAGAAGACGACATTCAAGCACTGAAGAGGTGTTGTAGTATAAAAGAGAAAAAGTTGTACCATTCGTTGATGCTTCGTATCAGTGAGAGGAGAATCATTCAGAAATTCAGAACATTTGCCACTTCCGGTTCCCAAGTTACAACTGGTGAACAAGCCTCTCCGAGAAAGAAGTTGAAACGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

501

Amino Acids

55.18

Weight (kDa)

4.83

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56570 AT3G56570
fragaria_vesca	FvH4_1g25860
malus_domestica	MD00G1030500.v1.1
prunus_persica	Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1
pyrus_communis	pycom520g01270
rosa_chinensis	RchiOBHm_Chr3g0485001
rosa_laevigata	RLG00000023178
rosa_multiflora	Rmu_sc0006040.1_g000023 Rmu_sc0008046.1_g000001 Rmu_sc0009462.1_g000004 Rmu_sc0013239.1_g000002 Rmu_sc0029923.1_g000001 Rmu_sc0034567.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397270
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh3AG265400 Rh3BG300900 Rh3BG301000 Rh3CG298800 Rh3CG299300 Rh3DG294700 Rh3DG295100
rosa_wichuraiana	Rw0G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	6 cut(s)	21, 197, 199, 201, 215, 245
AccIII	TCCGGA	1 cut(s)	1019
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	2 cut(s)	216, 970
AcsI	RAATTY	3 cut(s)	1162, 1315, 1424
AcuI	CTGAAG	3 cut(s)	666, 929, 1364
AcvI	CACGTG	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	72, 144
AfaI	GTAC	7 cut(s)	299, 503, 706, 742, 942, 1100, 1379
AfeI	AGCGCT	1 cut(s)	38
AfiI	CCNNNNNNNGG	4 cut(s)	247, 301, 731, 1039
AgsI	TTSAA	5 cut(s)	34, 628, 841, 1337, 1495
AhlI	ACTAGT	1 cut(s)	701
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	3 cut(s)	234, 270, 300
AjuI	GAANNNNNNNTTGG	2 cut(s)	914, 946
AluBI	AGCT	8 cut(s)	82, 382, 483, 611, 758, 830, 1084, 1302
AluI	AGCT	8 cut(s)	82, 382, 483, 611, 758, 830, 1084, 1302
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	2 cut(s)	94, 383
Alw44I	GTGCAC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	1019
Aor51HI	AGCGCT	1 cut(s)	38
AoxI	GGCC	8 cut(s)	103, 165, 216, 220, 238, 291, 324, 970
ApaI	GGGCCC	1 cut(s)	295
ApaLI	GTGCAC	1 cut(s)	620
ApeKI	GCWGC	9 cut(s)	66, 231, 364, 382, 509, 608, 866, 1084, 1087
ApoI	RAATTY	3 cut(s)	1162, 1315, 1424
AspLEI	GCGC	4 cut(s)	21, 39, 199, 201
AspS9I	GGNCC	3 cut(s)	238, 291, 292
AsuHPI	GGTGA	6 cut(s)	169, 178, 406, 545, 791, 1478
AvaI	CYCGRG	1 cut(s)	77
BaeGI	GKGCMC	2 cut(s)	295, 624
BalI	TGGCCA	1 cut(s)	972
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	2 cut(s)	260, 386
BbrPI	CACGTG	1 cut(s)	171
BbsI	GAAGAC	3 cut(s)	408, 829, 1332
Bbv12I	GWGCWC	1 cut(s)	624
BbvCI	CCTCAGC	2 cut(s)	612, 831
BbvI	GCAGC	9 cut(s)	78, 243, 351, 369, 521, 620, 853, 1071, 1074
BccI	CCATC	4 cut(s)	119, 335, 770, 793
BceAI	ACGGC	5 cut(s)	131, 244, 360, 1198, 1226
BcgI	CGANNNNNNTGC	2 cut(s)	1205, 1239
BciT130I	CCWGG	3 cut(s)	236, 272, 302
BciVI	GTATCC	1 cut(s)	1007
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	2 cut(s)	94, 383
BcuI	ACTAGT	1 cut(s)	701
BfaI	CTAG	5 cut(s)	531, 702, 738, 762, 1148
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	40
BfuI	GTATCC	1 cut(s)	1007
BglI	GCCNNNNNGGC	1 cut(s)	228
BmcAI	AGTACT	2 cut(s)	503, 742
Bme1390I	CCNGG	3 cut(s)	236, 272, 302
BmeT110I	CYCGRG	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	238, 291, 292
BmiI	GGNNCC	6 cut(s)	269, 293, 294, 576, 1071, 1450
BmrFI	CCNGG	3 cut(s)	236, 272, 302
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	5 cut(s)	66, 405, 985, 1111, 1380
BmuI	ACTGGG	1 cut(s)	298
BpiI	GAAGAC	3 cut(s)	408, 829, 1332
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	2 cut(s)	612, 831
BsaAI	YACGTR	1 cut(s)	171
BsaHI	GRCGYC	2 cut(s)	72, 144
BsaJI	CCNNGG	6 cut(s)	100, 162, 235, 271, 559, 1155
BsaWI	WCCGGW	2 cut(s)	1019, 1445
BsaXI	ACNNNNNCTCC	4 cut(s)	819, 849, 1289, 1319
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 301, 731, 1039
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	5 cut(s)	293, 431, 714, 736, 1468
Bse3DI	GCAATG	3 cut(s)	446, 694, 868
BseAI	TCCGGA	1 cut(s)	1019
BseBI	CCWGG	3 cut(s)	236, 272, 302
BseDI	CCNNGG	6 cut(s)	100, 162, 235, 271, 559, 1155
BseGI	GGATG	6 cut(s)	48, 57, 327, 622, 1028, 1126
BseLI	CCNNNNNNNGG	4 cut(s)	247, 301, 731, 1039
BseMI	GCAATG	3 cut(s)	446, 694, 868
BseMII	CTCAG	4 cut(s)	359, 603, 822, 1218
BseNI	ACTGG	5 cut(s)	293, 431, 714, 736, 1468
BsePI	GCGCGC	1 cut(s)	197
BseRI	GAGGAG	5 cut(s)	280, 365, 423, 512, 1423
BseSI	GKGCMC	2 cut(s)	295, 624
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	9 cut(s)	78, 243, 351, 369, 521, 620, 853, 1071, 1074
BsgI	GTGCAG	2 cut(s)	368, 852
Bsh1236I	CGCG	6 cut(s)	21, 197, 199, 201, 215, 245
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	8 cut(s)	105, 167, 218, 222, 240, 293, 326, 972
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	4 cut(s)	219, 314, 1020, 1446
BslFI	GGGAC	3 cut(s)	268, 388, 1264
BslI	CCNNNNNNNGG	4 cut(s)	247, 301, 731, 1039
BsmAI	GTCTC	2 cut(s)	94, 383
BsmBI	CGTCTC	2 cut(s)	94, 383
BsmFI	GGGAC	3 cut(s)	268, 388, 1264
BsnI	GGCC	8 cut(s)	105, 167, 218, 222, 240, 293, 326, 972
BsoBI	CYCGRG	1 cut(s)	77
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	295, 624
Bsp13I	TCCGGA	1 cut(s)	1019
Bsp1407I	TGTACA	1 cut(s)	1098
Bsp143I	GATC	5 cut(s)	207, 252, 454, 550, 1138
Bsp19I	CCATGG	1 cut(s)	1155
BspANI	GGCC	8 cut(s)	105, 167, 218, 222, 240, 293, 326, 972
BspCNI	CTCAG	4 cut(s)	360, 604, 823, 1219
BspEI	TCCGGA	1 cut(s)	1019
BspFNI	CGCG	6 cut(s)	21, 197, 199, 201, 215, 245
BspLI	GGNNCC	6 cut(s)	269, 293, 294, 576, 1071, 1450
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	1 cut(s)	462
BsrDI	GCAATG	3 cut(s)	446, 694, 868
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	1098
BsrI	ACTGG	5 cut(s)	293, 431, 714, 736, 1468
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	6 cut(s)	100, 162, 235, 271, 559, 1155
BssHII	GCGCGC	1 cut(s)	197
BssMI	GATC	5 cut(s)	207, 252, 454, 550, 1138
BssNI	GRCGYC	2 cut(s)	72, 144
BssSI	CACGAG	2 cut(s)	260, 386
BssT1I	CCWWGG	3 cut(s)	100, 162, 1155
Bst2BI	CACGAG	2 cut(s)	260, 386
Bst2UI	CCWGG	3 cut(s)	236, 272, 302
Bst4CI	ACNGT	3 cut(s)	88, 181, 394
Bst6I	CTCTTC	1 cut(s)	1340
BstACI	GRCGYC	2 cut(s)	72, 144
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	1098
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	199, 220, 974
BstDEI	CTNAG	5 cut(s)	368, 612, 719, 831, 1227
BstDSI	CCRYGG	2 cut(s)	559, 1155
BstF5I	GGATG	6 cut(s)	48, 57, 327, 622, 1028, 1126
BstFNI	CGCG	6 cut(s)	21, 197, 199, 201, 215, 245
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	4 cut(s)	21, 39, 199, 201
BstKTI	GATC	5 cut(s)	210, 255, 457, 553, 1141
BstMAI	GTCTC	2 cut(s)	94, 383
BstMBI	GATC	5 cut(s)	207, 252, 454, 550, 1138
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 228, 237, 353, 684, 764, 858
BstNI	CCWGG	3 cut(s)	236, 272, 302
BstSCI	CCNGG	3 cut(s)	234, 270, 300
BstSFI	CTRYAG	1 cut(s)	606
BstSLI	GKGCMC	2 cut(s)	295, 624
BstUI	CGCG	6 cut(s)	21, 197, 199, 201, 215, 245
BstV1I	GCAGC	9 cut(s)	78, 243, 351, 369, 521, 620, 853, 1071, 1074
BstV2I	GAAGAC	3 cut(s)	408, 829, 1332
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstZI	CGGCCG	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	1007
BsuRI	GGCC	8 cut(s)	105, 167, 218, 222, 240, 293, 326, 972
BtgI	CCRYGG	2 cut(s)	559, 1155
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	6 cut(s)	48, 57, 327, 622, 1028, 1126
BtsI	GCAGTG	2 cut(s)	114, 658
BtsIMutI	CAGTG	8 cut(s)	114, 286, 658, 663, 953, 1240, 1340, 1408
Cac8I	GCNNGC	3 cut(s)	199, 220, 974
CaiI	CAGNNNCTG	1 cut(s)	899
CfoI	GCGC	4 cut(s)	21, 39, 199, 201
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	238, 291, 292
CseI	GACGC	4 cut(s)	80, 152, 221, 945
Csp6I	GTAC	7 cut(s)	298, 502, 705, 741, 941, 1099, 1378
CviAII	CATG	3 cut(s)	205, 256, 1156
CviQI	GTAC	7 cut(s)	298, 502, 705, 741, 941, 1099, 1378
DdeI	CTNAG	5 cut(s)	368, 612, 719, 831, 1227
DpnI	GATC	5 cut(s)	209, 254, 456, 552, 1140
DpnII	GATC	5 cut(s)	207, 252, 454, 550, 1138
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	2 cut(s)	216, 970
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	1340
EarI	CTCTTC	1 cut(s)	1340
EciI	GGCGGA	3 cut(s)	82, 362, 371
EclXI	CGGCCG	1 cut(s)	216
Eco130I	CCWWGG	3 cut(s)	100, 162, 1155
Eco147I	AGGCCT	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	295
Eco47III	AGCGCT	1 cut(s)	38
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	3 cut(s)	666, 929, 1364
Eco72I	CACGTG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	3 cut(s)	234, 270, 300
EcoT14I	CCWWGG	3 cut(s)	100, 162, 1155
EcoT22I	ATGCAT	1 cut(s)	1126
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	3 cut(s)	100, 162, 1155
Esp3I	CGTCTC	2 cut(s)	94, 383
FaeI	CATG	3 cut(s)	208, 259, 1159
FaqI	GGGAC	3 cut(s)	268, 388, 1264
FatI	CATG	3 cut(s)	204, 255, 1155
FauI	CCCGC	2 cut(s)	42, 1287
FauNDI	CATATG	3 cut(s)	847, 1126, 1176
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	467
FokI	GGATG	6 cut(s)	44, 55, 314, 629, 1035, 1133
FriOI	GRGCYC	1 cut(s)	295
FseI	GGCCGGCC	1 cut(s)	222
FspBI	CTAG	5 cut(s)	531, 702, 738, 762, 1148
GlaI	GCGC	4 cut(s)	20, 38, 198, 200
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	8 cut(s)	105, 167, 218, 222, 240, 293, 326, 972
HapII	CCGG	4 cut(s)	219, 314, 1020, 1446
HgaI	GACGC	4 cut(s)	80, 152, 221, 945
HhaI	GCGC	4 cut(s)	21, 39, 199, 201
Hin1I	GRCGYC	2 cut(s)	72, 144
Hin1II	CATG	3 cut(s)	208, 259, 1159
Hin6I	GCGC	4 cut(s)	19, 37, 197, 199
HinP1I	GCGC	4 cut(s)	19, 37, 197, 199
HincII	GTYRAC	2 cut(s)	468, 1251
HindII	GTYRAC	2 cut(s)	468, 1251
HinfI	GANTC	5 cut(s)	156, 564, 656, 692, 1413
HpaII	CCGG	4 cut(s)	219, 314, 1020, 1446
HphI	GGTGA	6 cut(s)	169, 178, 406, 545, 791, 1478
Hpy166II	GTNNAC	5 cut(s)	468, 622, 891, 1251, 1469
Hpy188I	TCNGA	9 cut(s)	543, 569, 661, 1042, 1195, 1216, 1422, 1430, 1482
Hpy188III	TCNNGA	2 cut(s)	340, 1020
Hpy8I	GTNNAC	5 cut(s)	468, 622, 891, 1251, 1469
Hpy99I	CGWCG	6 cut(s)	74, 140, 146, 152, 215, 230
HpyAV	CCTTC	4 cut(s)	47, 391, 641, 677
HpyCH4III	ACNGT	3 cut(s)	88, 181, 394
HpyCH4IV	ACGT	2 cut(s)	135, 170
HpyCH4V	TGCA	9 cut(s)	66, 259, 385, 451, 608, 622, 869, 1124, 1286
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 228, 237, 353, 684, 764, 858
HpyF3I	CTNAG	5 cut(s)	368, 612, 719, 831, 1227
HpySE526I	ACGT	2 cut(s)	135, 170
Hsp92I	GRCGYC	2 cut(s)	72, 144
Hsp92II	CATG	3 cut(s)	208, 259, 1159
HspAI	GCGC	4 cut(s)	19, 37, 197, 199
Kpn2I	TCCGGA	1 cut(s)	1019
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	207, 252, 454, 550, 1138
LmnI	GCTCC	5 cut(s)	267, 277, 316, 379, 827
Lsp1109I	GCAGC	9 cut(s)	78, 243, 351, 369, 521, 620, 853, 1071, 1074
LweI	GCATC	5 cut(s)	66, 405, 985, 1111, 1380
MaeI	CTAG	5 cut(s)	531, 702, 738, 762, 1148
MaeII	ACGT	2 cut(s)	135, 170
MaeIII	GTNAC	3 cut(s)	779, 1110, 1456
MalI	GATC	5 cut(s)	209, 254, 456, 552, 1140
MauBI	CGCGCGCG	1 cut(s)	197
MboI	GATC	5 cut(s)	207, 252, 454, 550, 1138
MboII	GAAGA	7 cut(s)	413, 692, 829, 866, 1017, 1337, 1357
MhlI	GDGCHC	2 cut(s)	295, 624
MlsI	TGGCCA	1 cut(s)	972
MluCI	AATT	6 cut(s)	459, 473, 1162, 1208, 1315, 1424
MluNI	TGGCCA	1 cut(s)	972
MlyI	GAGTC	1 cut(s)	573
MmeI	TCCRAC	3 cut(s)	547, 684, 1239
Mox20I	TGGCCA	1 cut(s)	972
Mph1103I	ATGCAT	1 cut(s)	1126
MroI	TCCGGA	1 cut(s)	1019
MroNI	GCCGGC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	972
MseI	TTAA	2 cut(s)	594, 1062
MslI	CAYNNNNRTG	1 cut(s)	882
Msp20I	TGGCCA	1 cut(s)	972
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	4 cut(s)	219, 314, 1020, 1446
MspR9I	CCNGG	3 cut(s)	236, 272, 302
MvaI	CCWGG	3 cut(s)	236, 272, 302
MvnI	CGCG	6 cut(s)	21, 197, 199, 201, 215, 245
MwoI	GCNNNNNNNGC	7 cut(s)	63, 228, 237, 353, 684, 764, 858
NaeI	GCCGGC	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	1155
NdeI	CATATG	3 cut(s)	847, 1126, 1176
NdeII	GATC	5 cut(s)	207, 252, 454, 550, 1138
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	208, 259, 1159
NlaIV	GGNNCC	6 cut(s)	269, 293, 294, 576, 1071, 1450
NmuCI	GTSAC	1 cut(s)	779
NsiI	ATGCAT	1 cut(s)	1126
PaeR7I	CTCGAG	1 cut(s)	77
PauI	GCGCGC	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 144, 780
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	156, 656, 692, 1413
PflFI	GACNNNGTC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	572
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	572
Ppu21I	YACGTR	1 cut(s)	171
Psp6I	CCWGG	3 cut(s)	234, 270, 300
PspCI	CACGTG	1 cut(s)	171
PspGI	CCWGG	3 cut(s)	234, 270, 300
PspN4I	GGNNCC	6 cut(s)	269, 293, 294, 576, 1071, 1450
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	238, 291, 292
PspXI	VCTCGAGB	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	899
PsyI	GACNNNGTC	1 cut(s)	146
PteI	GCGCGC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	611
RigI	GGCCGGCC	1 cut(s)	222
RsaI	GTAC	7 cut(s)	299, 503, 706, 742, 942, 1100, 1379
RsaNI	GTAC	7 cut(s)	298, 502, 705, 741, 941, 1099, 1378
RseI	CAYNNNNRTG	1 cut(s)	882
SalI	GTCGAC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	594, 1062
Sau3AI	GATC	5 cut(s)	207, 252, 454, 550, 1138
Sau96I	GGNCC	3 cut(s)	238, 291, 292
ScaI	AGTACT	2 cut(s)	503, 742
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	3 cut(s)	236, 272, 302
SduI	GDGCHC	2 cut(s)	295, 624
SfaNI	GCATC	5 cut(s)	66, 405, 985, 1111, 1380
SfcI	CTRYAG	1 cut(s)	606
Sfr274I	CTCGAG	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	882
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SpeI	ACTAGT	1 cut(s)	701
Sse9I	AATT	6 cut(s)	459, 473, 1162, 1208, 1315, 1424
SseBI	AGGCCT	1 cut(s)	105
SspI	AATATT	1 cut(s)	1046
SspMI	CTAG	5 cut(s)	531, 702, 738, 762, 1148
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	3 cut(s)	234, 270, 300
StyI	CCWWGG	3 cut(s)	100, 162, 1155
TaaI	ACNGT	3 cut(s)	88, 181, 394
TaiI	ACGT	2 cut(s)	138, 173
TaqI	TCGA	5 cut(s)	78, 210, 225, 467, 927
TasI	AATT	6 cut(s)	459, 473, 1162, 1208, 1315, 1424
TatI	WGTACW	5 cut(s)	501, 704, 740, 940, 1098
TauI	GCSGC	4 cut(s)	14, 197, 218, 308
TfiI	GAWTC	4 cut(s)	156, 656, 692, 1413
Tru1I	TTAA	2 cut(s)	594, 1062
Tru9I	TTAA	2 cut(s)	594, 1062
TscAI	CASTG	8 cut(s)	121, 293, 658, 670, 953, 1240, 1347, 1408
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	9 cut(s)	66, 231, 364, 382, 509, 608, 866, 1084, 1087
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	4 cut(s)	59, 705, 866, 1308
TspGWI	ACGGA	2 cut(s)	392, 576
TspRI	CASTG	8 cut(s)	121, 293, 658, 670, 953, 1240, 1347, 1408
Tth111I	GACNNNGTC	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	620
XapI	RAATTY	3 cut(s)	1162, 1315, 1424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1174, 1460
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	5 cut(s)	531, 702, 738, 762, 1148
ZrmI	AGTACT	2 cut(s)	503, 742
Zsp2I	ATGCAT	1 cut(s)	1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.