Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003800

Physical Location & Seq

Genomic Coordinates Reverse (-)

30252808 .. 30253380

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG301000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCGGCTCGGCGCGTGAGGGCTTTCAAGCGCTGGATGAAGCGGGAAGGCATCCAATGCAGCGACGCCCTCGACTTGACCGTCTCCGCCACCCAAGGCCTCTCCATCACTGCCCTCGCCGACCTCCACGTCGGCGACGCCGTCGCCAGAATCCCCAAGGCCACGTGCCTCACTGTCATCACCACCGCCGCACGCGACATGATCGACGGCAGCCTGGGCCTCGCGGTGGCGATCATGCACGAGAGGAGCCTGGGGGAGCAGTCCCACTGGGCCCCGTACCTGGCGGTGTTGCCGGAGCAAGAGCCCATTCCGTTGGTCTGGACGGCGGAGGAGGCGGAGGAGCTGCTGAGAGGGACGGAGCTGCACGACACGGTGAAGGAGGACAGAGGAGTGATGTTGGAGGACTGGAAAGAGAGCATTGAGCCATTGCAGGATCAAATTGGGTCGACCCAATTTGAGAGCTTTTTCGGGTTTGAGGAGTACCTGGCAGCAAGAACGCTGATTGCTTCTAGGTCTTTTCAGATTGATGATCACTACCACGGAGTCGGAATGGTTCCTTTGGCTGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

190

Amino Acids

21.11

Weight (kDa)

4.79

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56570 AT3G56570
fragaria_vesca	FvH4_1g25860
malus_domestica	MD00G1030500.v1.1
prunus_persica	Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1
pyrus_communis	pycom520g01270
rosa_chinensis	RchiOBHm_Chr3g0485001
rosa_laevigata	RLG00000023178
rosa_multiflora	Rmu_sc0006040.1_g000023 Rmu_sc0008046.1_g000001 Rmu_sc0009462.1_g000004 Rmu_sc0013239.1_g000002 Rmu_sc0029923.1_g000001 Rmu_sc0034567.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397270
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh3AG265400 Rh3BG300900 Rh3BG301000 Rh3CG298800 Rh3CG299300 Rh3DG294700 Rh3DG295100
rosa_wichuraiana	Rw0G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	80, 128
AccI	GTMKAC	1 cut(s)	446
AccII	CGCG	3 cut(s)	15, 195, 224
AciI	CCGC	9 cut(s)	5, 43, 87, 186, 189, 224, 284, 326, 335
AclWI	GGATC	1 cut(s)	441
AcvI	CACGTG	1 cut(s)	165
AcyI	GRCGYC	2 cut(s)	66, 138
AfaI	GTAC	2 cut(s)	278, 482
AfeI	AGCGCT	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	226, 280
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	1 cut(s)	28
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	4 cut(s)	213, 249, 279, 483
AluBI	AGCT	3 cut(s)	343, 361, 462
AluI	AGCT	3 cut(s)	343, 361, 462
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	441
Aor51HI	AGCGCT	1 cut(s)	32
AoxI	GGCC	4 cut(s)	97, 159, 217, 270
ApaI	GGGCCC	1 cut(s)	274
ApeKI	GCWGC	5 cut(s)	60, 210, 343, 361, 488
AspLEI	GCGC	2 cut(s)	15, 33
AspS9I	GGNCC	3 cut(s)	217, 270, 271
AsuHPI	GGTGA	2 cut(s)	172, 385
BaeGI	GKGCMC	1 cut(s)	274
BanII	GRGCYC	2 cut(s)	274, 306
BauI	CACGAG	1 cut(s)	239
BbrPI	CACGTG	1 cut(s)	165
BbvI	GCAGC	5 cut(s)	72, 222, 330, 348, 500
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	3 cut(s)	125, 223, 339
BciT130I	CCWGG	4 cut(s)	215, 251, 281, 485
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	7 cut(s)	6, 61, 189, 211, 344, 362, 489
BlsI	GCNGC	7 cut(s)	7, 62, 190, 212, 345, 363, 490
Bme1390I	CCNGG	4 cut(s)	215, 251, 281, 485
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	217, 270, 271
BmiI	GGNNCC	4 cut(s)	248, 272, 273, 555
BmrFI	CCNGG	4 cut(s)	215, 251, 281, 485
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	66, 138
BsaJI	CCNNGG	5 cut(s)	94, 156, 214, 250, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 280
Bse1I	ACTGG	2 cut(s)	272, 410
Bse3DI	GCAATG	1 cut(s)	425
BseBI	CCWGG	4 cut(s)	215, 251, 281, 485
BseDI	CCNNGG	5 cut(s)	94, 156, 214, 250, 538
BseGI	GGATG	2 cut(s)	42, 51
BseLI	CCNNNNNNNGG	2 cut(s)	226, 280
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	272, 410
BseRI	GAGGAG	5 cut(s)	259, 344, 353, 402, 491
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	5 cut(s)	72, 222, 330, 348, 500
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	3 cut(s)	15, 195, 224
BshFI	GGCC	4 cut(s)	99, 161, 219, 272
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	2 cut(s)	247, 367
BslI	CCNNNNNNNGG	2 cut(s)	226, 280
BsmAI	GTCTC	1 cut(s)	88
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	247, 367
BsnI	GGCC	4 cut(s)	99, 161, 219, 272
Bsp120I	GGGCCC	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	274, 306
Bsp143I	GATC	4 cut(s)	201, 231, 433, 529
BspACI	CCGC	9 cut(s)	5, 43, 87, 186, 189, 224, 284, 326, 335
BspANI	GGCC	4 cut(s)	99, 161, 219, 272
BspCNI	CTCAG	1 cut(s)	339
BspFNI	CGCG	3 cut(s)	15, 195, 224
BspLI	GGNNCC	4 cut(s)	248, 272, 273, 555
BspPI	GGATC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	272, 410
BssECI	CCNNGG	5 cut(s)	94, 156, 214, 250, 538
BssMI	GATC	4 cut(s)	201, 231, 433, 529
BssNI	GRCGYC	2 cut(s)	66, 138
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	94, 156
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	4 cut(s)	215, 251, 281, 485
Bst4CI	ACNGT	3 cut(s)	82, 175, 373
BstACI	GRCGYC	2 cut(s)	66, 138
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	42, 51
BstFNI	CGCG	3 cut(s)	15, 195, 224
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	2 cut(s)	15, 33
BstKTI	GATC	4 cut(s)	204, 234, 436, 532
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	4 cut(s)	201, 231, 433, 529
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 216, 332
BstNI	CCWGG	4 cut(s)	215, 251, 281, 485
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	4 cut(s)	213, 249, 279, 483
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	3 cut(s)	15, 195, 224
BstV1I	GCAGC	5 cut(s)	72, 222, 330, 348, 500
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	99, 161, 219, 272
BtgI	CCRYGG	1 cut(s)	538
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	42, 51
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	108, 171, 265
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	2 cut(s)	15, 33
Cfr13I	GGNCC	3 cut(s)	217, 270, 271
CseI	GACGC	2 cut(s)	74, 146
Csp6I	GTAC	2 cut(s)	277, 481
CviAII	CATG	3 cut(s)	199, 235, 568
CviQI	GTAC	2 cut(s)	277, 481
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	4 cut(s)	203, 233, 435, 531
DpnII	GATC	4 cut(s)	201, 231, 433, 529
DrdI	GACNNNNNNGTC	2 cut(s)	80, 128
DseDI	GACNNNNNNGTC	2 cut(s)	80, 128
EciI	GGCGGA	3 cut(s)	76, 341, 350
Eco130I	CCWWGG	2 cut(s)	94, 156
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	274, 306
Eco47III	AGCGCT	1 cut(s)	32
Eco72I	CACGTG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	4 cut(s)	213, 249, 279, 483
EcoT14I	CCWWGG	2 cut(s)	94, 156
EcoT38I	GRGCYC	2 cut(s)	274, 306
ErhI	CCWWGG	2 cut(s)	94, 156
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	3 cut(s)	202, 238, 571
FaiI	YATR	3 cut(s)	200, 236, 569
FaqI	GGGAC	2 cut(s)	247, 367
FatI	CATG	3 cut(s)	198, 234, 567
FauI	CCCGC	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	7 cut(s)	6, 61, 189, 211, 344, 362, 489
FokI	GGATG	2 cut(s)	38, 49
FriOI	GRGCYC	2 cut(s)	274, 306
Fsp4HI	GCNGC	7 cut(s)	6, 61, 189, 211, 344, 362, 489
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	2 cut(s)	14, 32
GluI	GCNGC	7 cut(s)	6, 61, 189, 211, 344, 362, 489
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	4 cut(s)	99, 161, 219, 272
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	2 cut(s)	74, 146
HhaI	GCGC	2 cut(s)	15, 33
Hin1I	GRCGYC	2 cut(s)	66, 138
Hin1II	CATG	3 cut(s)	202, 238, 571
Hin6I	GCGC	2 cut(s)	13, 31
HinP1I	GCGC	2 cut(s)	13, 31
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	2 cut(s)	150, 543
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	172, 385
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	2 cut(s)	522, 548
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	5 cut(s)	68, 134, 140, 146, 209
HpyAV	CCTTC	2 cut(s)	41, 370
HpyCH4III	ACNGT	3 cut(s)	82, 175, 373
HpyCH4IV	ACGT	2 cut(s)	129, 164
HpyCH4V	TGCA	4 cut(s)	60, 238, 364, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 216, 332
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	2 cut(s)	129, 164
Hsp92I	GRCGYC	2 cut(s)	66, 138
Hsp92II	CATG	3 cut(s)	202, 238, 571
HspAI	GCGC	2 cut(s)	13, 31
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	201, 231, 433, 529
LmnI	GCTCC	5 cut(s)	246, 256, 295, 340, 358
Lsp1109I	GCAGC	5 cut(s)	72, 222, 330, 348, 500
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	129, 164
MalI	GATC	4 cut(s)	203, 233, 435, 531
MboI	GATC	4 cut(s)	201, 231, 433, 529
MhlI	GDGCHC	2 cut(s)	274, 306
MluCI	AATT	2 cut(s)	438, 452
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	2 cut(s)	378, 526
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	4 cut(s)	215, 251, 281, 485
MvaI	CCWGG	4 cut(s)	215, 251, 281, 485
MvnI	CGCG	3 cut(s)	15, 195, 224
MwoI	GCNNNNNNNGC	3 cut(s)	57, 216, 332
NdeII	GATC	4 cut(s)	201, 231, 433, 529
NlaIII	CATG	3 cut(s)	202, 238, 571
NlaIV	GGNNCC	4 cut(s)	248, 272, 273, 555
NspI	RCATGY	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	99
PciI	ACATGT	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 138
PfeI	GAWTC	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	7 cut(s)	7, 62, 190, 212, 345, 363, 490
PleI	GAGTC	1 cut(s)	551
PmaCI	CACGTG	1 cut(s)	165
PmlI	CACGTG	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	551
Ppu21I	YACGTR	1 cut(s)	165
PscI	ACATGT	1 cut(s)	567
Psp6I	CCWGG	4 cut(s)	213, 249, 279, 483
PspCI	CACGTG	1 cut(s)	165
PspGI	CCWGG	4 cut(s)	213, 249, 279, 483
PspN4I	GGNNCC	4 cut(s)	248, 272, 273, 555
PspOMI	GGGCCC	1 cut(s)	270
PspPI	GGNCC	3 cut(s)	217, 270, 271
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	278, 482
RsaNI	GTAC	2 cut(s)	277, 481
SalI	GTCGAC	1 cut(s)	445
SatI	GCNGC	7 cut(s)	6, 61, 189, 211, 344, 362, 489
Sau3AI	GATC	4 cut(s)	201, 231, 433, 529
Sau96I	GGNCC	3 cut(s)	217, 270, 271
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	4 cut(s)	215, 251, 281, 485
SduI	GDGCHC	2 cut(s)	274, 306
SetI	ASST	9 cut(s)	126, 132, 167, 282, 345, 363, 464, 486, 515
SfaNI	GCATC	1 cut(s)	60
Sse9I	AATT	2 cut(s)	438, 452
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	9 cut(s)	5, 43, 87, 186, 189, 224, 284, 326, 335
SspMI	CTAG	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	213, 249, 279, 483
StyI	CCWWGG	2 cut(s)	94, 156
TaaI	ACNGT	3 cut(s)	82, 175, 373
TaiI	ACGT	2 cut(s)	132, 167
TaqI	TCGA	3 cut(s)	72, 204, 446
TasI	AATT	2 cut(s)	438, 452
TauI	GCSGC	2 cut(s)	8, 191
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	3 cut(s)	115, 178, 272
TseI	GCWGC	5 cut(s)	60, 210, 343, 361, 488
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	3 cut(s)	300, 371, 555
TspRI	CASTG	3 cut(s)	115, 178, 272
Tth111I	GACNNNGTC	1 cut(s)	140
XceI	RCATGY	1 cut(s)	571
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.