Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005261

Physical Location & Seq

Genomic Coordinates Reverse (-)

16198380 .. 16203765

Gene Structure 5386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1081200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAGGCTTTGGTTGCACTGAGATTAAAAGTCAAGAAGATTGATCAATACGGCTCTCGTTCAAAGAGACATAACAATTCTGCAGTACACCTGACAAGTAATAAGTCAAGTGCAGATGACAAATTAGGAAATGAGCCTACTGGTTTGACATCTGGATTGCAAGTAAATGAGGAGCATCGACGAGAACCAAGCACTGGTGGTTCAGAAGTCAATCCGAACCATGTCAAGAATTCTAGTAGCGATGGAAGAGAGTTATTGAAAACCTATACCCAAAAAGAAGATCCTATGGAGGTTCTTGAGCATGTGAGGATTACCAATACGCTTGAATCTCCAATATCCACCATAAAAGGTGTTTTCAAGGACTCTAGGGAAGAAGAGTTGAGCTTTGATAAAGAGGAGCTGAAGAGAGTGGAAGAACGTTTAAGAGCTGCGTTCATTCAATTTTACCACCAGCTTCAACTGCTAAAGCACTACAGTTTTATGAACCTCTCAGCATTTTCGAAGATTATGAAAAAATATGCGAAGATTGCATCAAGGATAGCGGCCAGATCATACATGCTAATAGTAGACAACTCTAATGTCGGCAGTTCTGATGAGGTCACTAACCTGTTGGAGAGAGTGGAGACTACCTTCATACAAAAATTTTCAAACTCAAATCGCAGGGAAGGTATGAAGTCACTGAGGCCAAAAGCTAAAAGAGAAAGGCACAGTGTAACATTCTTCTCCGGTTTCTTTTCTGGCTGCTCAATTGCACTACTGGTAGCTATTGTTTTCCCACTTTACAGTTTATTTGGATACATCACTCTGCATATGCTCTTGTATGCTGCAGATATATATTTCTGGAGGTGTTATAGGGTCAACTATGCCTTTATATTTGGTTTCAACAAAGGAACGGAGCTGGGCTACCTCGAAGTTTTTCTCCTTGCCACTGGTCTTGCAGTACTTTCATTGGGTGGTTTCCTGGCAAACTTACACTTGGACTTGAGTGCTGAAAAATACAAGACTGTGACAGAATTGGTTCCGTTGGGCTTACTTGCTCCTGGTGCCTCTGTTGTAGAACTTCCTCAATTTGTGCAAATGATTTGTGTTACCTTTCTCTGTGCAGTTGGTCCTTGCCATCACCTTCTGCCCTTCAAAATTATATACCATTCAAGTCGTTTCTTTTTCATTCGATCCTTATTCCGCTGCACATGCGCCCCTCTTTACCCGGTGCAAGCCCTGAGGAGTTTTGTGTTATACGTTTGCTACTACGGTTTGGGGGAATCTTCAAGGAGGCAAAGCAAGTGCCGTAGTCATGGTCTCTACAATACGTTATATTTCATTATTGCTGTCGTACCATTTTGGATGCGCTTCCTACAGGTCTCTGATGCAGAATGCATCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

462

Amino Acids

52.47

Weight (kDa)

9.21

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	2 - 186	4.8e-26	SPX domain
EXS	PF03124	257 - 454	1.8e-22	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69480 AT1G69480
fragaria_vesca	FvH4_4g30940 FvH4_4g30940 FvH4_4g30940
malus_domestica	MD00G1081200.v1.1 MD00G1081400.v1.1
prunus_persica	Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1
pyrus_communis	pycom13g06130
rosa_chinensis	RchiOBHm_Chr4g0439241 RchiOBHm_Chr4g0439281
rosa_laevigata	RLG00000006285
rosa_multiflora	Rmu_sc0006598.1_g000011 Rmu_ssc0000171.1_g000023 Rmu_ssc0000171.1_g000024
rosa_roxburghii	Rroxscaffold_5G00380240
rosa_rugosa	Rorug04G0317200
rosa_samantha	Rh4AG367800 Rh4AG367900 Rh4BG379700 Rh4CG394000 Rh4DG374200
rosa_wichuraiana	Rw0G005610 Rw0G011620 Rw5G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1043
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	542, 1183
AclI	AACGTT	1 cut(s)	418
AclWI	GGATC	2 cut(s)	275, 1167
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	229, 641
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	3 cut(s)	87, 942, 1335
AfiI	CCNNNNNNNGG	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	960, 1039
AluBI	AGCT	7 cut(s)	384, 400, 428, 454, 692, 764, 898
AluI	AGCT	7 cut(s)	384, 400, 428, 454, 692, 764, 898
Alw26I	GTCTC	4 cut(s)	61, 617, 1304, 1366
AlwI	GGATC	2 cut(s)	275, 1167
AoxI	GGCC	2 cut(s)	543, 683
ApeKI	GCWGC	4 cut(s)	428, 741, 824, 1185
ApoI	RAATTY	2 cut(s)	229, 641
Asp700I	GAANNNNTTC	2 cut(s)	915, 1017
AspLEI	GCGC	2 cut(s)	1196, 1350
AspS9I	GGNCC	1 cut(s)	1109
AsuC2I	CCSGG	1 cut(s)	1208
AsuHPI	GGTGA	1 cut(s)	1112
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	1109
AxyI	CCTNAGG	1 cut(s)	1220
BanI	GGYRCC	1 cut(s)	1043
BbvI	GCAGC	4 cut(s)	415, 728, 811, 1172
BccI	CCATC	2 cut(s)	236, 1125
BceAI	ACGGC	2 cut(s)	67, 1272
BciT130I	CCWGG	2 cut(s)	962, 1041
BciVI	GTATCC	1 cut(s)	788
BclI	TGATCA	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	1208
BcoDI	GTCTC	4 cut(s)	61, 617, 1304, 1366
BfaI	CTAG	2 cut(s)	234, 366
BfmI	CTRYAG	4 cut(s)	81, 472, 825, 1355
BfuI	GTATCC	1 cut(s)	788
BisI	GCNGC	5 cut(s)	429, 543, 742, 825, 1186
BlsI	GCNGC	5 cut(s)	430, 544, 743, 826, 1187
BmcAI	AGTACT	1 cut(s)	942
Bme1390I	CCNGG	3 cut(s)	962, 1041, 1208
Bme18I	GGWCC	1 cut(s)	1109
BmgT120I	GGNCC	1 cut(s)	1109
BmiI	GGNNCC	2 cut(s)	1020, 1045
BmrFI	CCNGG	3 cut(s)	962, 1041, 1208
BmsI	GCATC	4 cut(s)	184, 539, 1335, 1357
BpmI	CTGGAG	1 cut(s)	862
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	317, 1003
BpuMI	CCSGG	1 cut(s)	1208
BsaI	GGTCTC	2 cut(s)	1304, 1366
BsaWI	WCCGGW	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	4 cut(s)	145, 199, 762, 934
Bse21I	CCTNAGG	1 cut(s)	1220
BseBI	CCWGG	2 cut(s)	962, 1041
BseGI	GGATG	1 cut(s)	1350
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	4 cut(s)	11, 504, 671, 1211
BseNI	ACTGG	4 cut(s)	145, 199, 762, 934
BseRI	GAGGAG	3 cut(s)	185, 410, 1237
BseXI	GCAGC	4 cut(s)	415, 728, 811, 1172
BseYI	CCCAGC	1 cut(s)	898
BsgI	GTGCAG	3 cut(s)	132, 1122, 1171
BshFI	GGCC	2 cut(s)	545, 685
BshNI	GGYRCC	1 cut(s)	1043
BsiSI	CCGG	2 cut(s)	726, 1208
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	4 cut(s)	61, 617, 1304, 1366
BsmI	GAATGC	1 cut(s)	1379
BsnI	GGCC	2 cut(s)	545, 685
Bso31I	GGTCTC	2 cut(s)	1304, 1366
Bsp119I	TTCGAA	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	43, 280, 548, 1172
BspACI	CCGC	2 cut(s)	542, 1183
BspANI	GGCC	2 cut(s)	545, 685
BspCNI	CTCAG	4 cut(s)	12, 503, 672, 1212
BspLI	GGNNCC	2 cut(s)	1020, 1045
BspMAI	CTGCAG	2 cut(s)	85, 829
BspPI	GGATC	2 cut(s)	275, 1167
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	1043
BspTNI	GGTCTC	2 cut(s)	1304, 1366
BsrI	ACTGG	4 cut(s)	145, 199, 762, 934
BssMI	GATC	4 cut(s)	43, 280, 548, 1172
Bst2UI	CCWGG	2 cut(s)	962, 1041
Bst4CI	ACNGT	5 cut(s)	476, 710, 785, 1006, 1253
Bst6I	CTCTTC	3 cut(s)	241, 369, 398
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	1215
BstDEI	CTNAG	4 cut(s)	20, 490, 680, 1220
BstF5I	GGATG	1 cut(s)	1350
BstHHI	GCGC	2 cut(s)	1196, 1350
BstKTI	GATC	4 cut(s)	46, 283, 551, 1175
BstMAI	GTCTC	4 cut(s)	61, 617, 1304, 1366
BstMBI	GATC	4 cut(s)	43, 280, 548, 1172
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 460, 527, 1043, 1191
BstNI	CCWGG	2 cut(s)	962, 1041
BstNSI	RCATGY	3 cut(s)	305, 559, 1194
BstSCI	CCNGG	3 cut(s)	960, 1039, 1206
BstSFI	CTRYAG	4 cut(s)	81, 472, 825, 1355
BstV1I	GCAGC	4 cut(s)	415, 728, 811, 1172
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	1220
BsuI	GTATCC	1 cut(s)	788
BsuRI	GGCC	2 cut(s)	545, 685
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	1350
BtsIMutI	CAGTG	5 cut(s)	17, 192, 677, 715, 927
Cac8I	GCNNGC	1 cut(s)	1215
CfoI	GCGC	2 cut(s)	1196, 1350
Cfr13I	GGNCC	1 cut(s)	1109
Csp6I	GTAC	3 cut(s)	86, 941, 1334
CspCI	CAANNNNNGTGG	2 cut(s)	916, 951
CviAII	CATG	5 cut(s)	221, 302, 556, 1191, 1295
CviQI	GTAC	3 cut(s)	86, 941, 1334
DdeI	CTNAG	4 cut(s)	20, 490, 680, 1220
DpnI	GATC	4 cut(s)	45, 282, 550, 1174
DpnII	GATC	4 cut(s)	43, 280, 548, 1172
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	241, 369, 398
EarI	CTCTTC	3 cut(s)	241, 369, 398
Eco31I	GGTCTC	2 cut(s)	1304, 1366
Eco47I	GGWCC	1 cut(s)	1109
Eco57I	CTGAAG	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	1220
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	960, 1039
EcoT22I	ATGCAT	1 cut(s)	1379
FaeI	CATG	5 cut(s)	224, 305, 559, 1194, 1298
FatI	CATG	5 cut(s)	220, 301, 555, 1190, 1294
FauNDI	CATATG	1 cut(s)	810
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	5 cut(s)	429, 543, 742, 825, 1186
FokI	GGATG	1 cut(s)	1357
Fsp4HI	GCNGC	5 cut(s)	429, 543, 742, 825, 1186
FspBI	CTAG	2 cut(s)	234, 366
GlaI	GCGC	2 cut(s)	1195, 1349
GluI	GCNGC	5 cut(s)	429, 543, 742, 825, 1186
GsaI	CCCAGC	1 cut(s)	902
GsuI	CTGGAG	1 cut(s)	862
HaeIII	GGCC	2 cut(s)	545, 685
HapII	CCGG	2 cut(s)	726, 1208
HhaI	GCGC	2 cut(s)	1196, 1350
Hin1II	CATG	5 cut(s)	224, 305, 559, 1194, 1298
Hin6I	GCGC	2 cut(s)	1194, 1348
HinP1I	GCGC	2 cut(s)	1194, 1348
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HinfI	GANTC	3 cut(s)	326, 362, 1262
HpaII	CCGG	2 cut(s)	726, 1208
HphI	GGTGA	1 cut(s)	1112
Hpy166II	GTNNAC	3 cut(s)	88, 568, 859
Hpy188I	TCNGA	4 cut(s)	205, 216, 592, 1366
Hpy188III	TCNNGA	5 cut(s)	34, 153, 226, 296, 841
Hpy8I	GTNNAC	3 cut(s)	88, 568, 859
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	4 cut(s)	640, 659, 1133, 1141
HpyCH4III	ACNGT	5 cut(s)	476, 710, 785, 1006, 1253
HpyCH4IV	ACGT	3 cut(s)	418, 1239, 1310
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 460, 527, 1043, 1191
HpyF3I	CTNAG	4 cut(s)	20, 490, 680, 1220
HpySE526I	ACGT	3 cut(s)	418, 1239, 1310
Hsp92II	CATG	5 cut(s)	224, 305, 559, 1194, 1298
HspAI	GCGC	2 cut(s)	1194, 1348
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	43, 280, 548, 1172
LmnI	GCTCC	4 cut(s)	172, 397, 895, 1042
Lsp1109I	GCAGC	4 cut(s)	415, 728, 811, 1172
LweI	GCATC	4 cut(s)	184, 539, 1335, 1357
MaeI	CTAG	2 cut(s)	234, 366
MaeII	ACGT	3 cut(s)	418, 1239, 1310
MaeIII	GTNAC	5 cut(s)	598, 675, 712, 1006, 1087
MalI	GATC	4 cut(s)	45, 282, 550, 1174
MboI	GATC	4 cut(s)	43, 280, 548, 1172
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	9 cut(s)	76, 122, 229, 440, 641, 747, 1013, 1067, 1137
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	591
Mph1103I	ATGCAT	1 cut(s)	1379
MroXI	GAANNNNTTC	2 cut(s)	915, 1017
MseI	TTAA	2 cut(s)	26, 422
MspA1I	CMGCKG	1 cut(s)	1185
MspI	CCGG	2 cut(s)	726, 1208
MspR9I	CCNGG	3 cut(s)	962, 1041, 1208
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	1379
MvaI	CCWGG	2 cut(s)	962, 1041
MwoI	GCNNNNNNNGC	5 cut(s)	14, 460, 527, 1043, 1191
NciI	CCSGG	1 cut(s)	1208
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	4 cut(s)	43, 280, 548, 1172
NlaIII	CATG	5 cut(s)	224, 305, 559, 1194, 1298
NlaIV	GGNNCC	2 cut(s)	1020, 1045
NmuCI	GTSAC	3 cut(s)	598, 675, 1006
NsiI	ATGCAT	1 cut(s)	1379
NspI	RCATGY	3 cut(s)	305, 559, 1194
NspV	TTCGAA	1 cut(s)	500
PctI	GAATGC	1 cut(s)	1379
PdmI	GAANNNNTTC	2 cut(s)	915, 1017
PfeI	GAWTC	2 cut(s)	326, 1262
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	5 cut(s)	430, 544, 743, 826, 1187
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp1406I	AACGTT	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	960, 1039
PspFI	CCCAGC	1 cut(s)	898
PspGI	CCWGG	2 cut(s)	960, 1039
PspN4I	GGNNCC	2 cut(s)	1020, 1045
PspPI	GGNCC	1 cut(s)	1109
PstI	CTGCAG	2 cut(s)	85, 829
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	3 cut(s)	87, 942, 1335
RsaNI	GTAC	3 cut(s)	86, 941, 1334
SaqAI	TTAA	2 cut(s)	26, 422
SatI	GCNGC	5 cut(s)	429, 543, 742, 825, 1186
Sau3AI	GATC	4 cut(s)	43, 280, 548, 1172
Sau96I	GGNCC	1 cut(s)	1109
ScaI	AGTACT	1 cut(s)	942
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	962, 1041, 1208
SfaNI	GCATC	4 cut(s)	184, 539, 1335, 1357
SfcI	CTRYAG	4 cut(s)	81, 472, 825, 1355
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	1 cut(s)	1109
SmlI	CTYRAG	2 cut(s)	296, 982
SmoI	CTYRAG	2 cut(s)	296, 982
Sse9I	AATT	9 cut(s)	76, 122, 229, 440, 641, 747, 1013, 1067, 1137
SsiI	CCGC	2 cut(s)	542, 1183
SspMI	CTAG	2 cut(s)	234, 366
StyD4I	CCNGG	3 cut(s)	960, 1039, 1206
TaaI	ACNGT	5 cut(s)	476, 710, 785, 1006, 1253
TaiI	ACGT	3 cut(s)	421, 1242, 1313
TaqI	TCGA	4 cut(s)	178, 500, 909, 1171
TasI	AATT	9 cut(s)	76, 122, 229, 440, 641, 747, 1013, 1067, 1137
TatI	WGTACW	2 cut(s)	85, 940
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	326, 1262
Tru1I	TTAA	2 cut(s)	26, 422
Tru9I	TTAA	2 cut(s)	26, 422
TscAI	CASTG	5 cut(s)	24, 199, 684, 715, 934
TseFI	GTSAC	3 cut(s)	598, 675, 1006
TseI	GCWGC	4 cut(s)	428, 741, 824, 1185
Tsp45I	GTSAC	3 cut(s)	598, 675, 1006
TspDTI	ATGAA	8 cut(s)	424, 497, 524, 622, 686, 936, 1156, 1309
TspGWI	ACGGA	2 cut(s)	908, 1011
TspRI	CASTG	5 cut(s)	24, 199, 684, 715, 934
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	1109
XapI	RAATTY	2 cut(s)	229, 641
XceI	RCATGY	3 cut(s)	305, 559, 1194
XmiI	GTMKAC	1 cut(s)	567
XmnI	GAANNNNTTC	2 cut(s)	915, 1017
XspI	CTAG	2 cut(s)	234, 366
ZrmI	AGTACT	1 cut(s)	942
Zsp2I	ATGCAT	1 cut(s)	1379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.