Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005261

Physical Location & Seq

Genomic Coordinates Reverse (-)

59187916 .. 59189219

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG374200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAGTTTGGGAAGGAGTTCGAGAAACAAATGGTGCCCGAGTGGGCAGAAGCCTACATGGATTATAATGGCCTCAAGAGGATATTGCGAGAGCTAAGAGAGTACAAGCAAAAAACCGCTTCCTTACGGAACATTGAATGGAGGAGGCTAGGAGATGTCGAGGTCCAAGTAATAGATGTGTACACATTGCGTGGAGGTGGTTCCAAGCAGTTTTATAAGACCAAGTTCTTGAGGCCGTCAGAGGAAGGAGGAGAAATTGAGGTGACATTCTTCAGAAAACTTGACGAAGAGCTCAACAAGGTCAATACATTTTACAAGGAAAAATTGGAGGAGGTGAAACAGGAAGCAAGTCAGTTGAATAAACAAATGGATGCTTTGGTTGCACTGAGGATTAAGATGAAGATTCCGCATCAAGATGGCTCAAGTTCAGGGAGGCGTGACAATGTTGATTCTCCAATGCCTCTTACAAGGAGCACAAATGCACCTGATACTTCAGGAGTTGAGCTTAGGGCATTGGAATCTGGAGTAAAAGAAAATGATAAGGATCAGCAAGAAACACAGTTCTCATCAAGGAGAGCATCCAGGTCATACATGCAAATAGTAGACAACTCTGATCTTGGAAATTCTGATGAGGTTACTAACCTTATGGAGGGGGTGGAGGCTACCTTCATCAAGAATTTTTCACACTCAAATCGTAGAAAAGGTATGAAGTTACTGAGGCCAAAAGCAAAACGAGAGAAGCACAAAGTATCGTTTTTATCAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

255

Amino Acids

29.53

Weight (kDa)

9.34

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 43	1.2e-13	SPX domain
SPX	PF03105	65 - 249	6.5e-18	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69480 AT1G69480
fragaria_vesca	FvH4_4g30940 FvH4_4g30940 FvH4_4g30940
malus_domestica	MD00G1081200.v1.1 MD00G1081400.v1.1
prunus_persica	Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1
pyrus_communis	pycom13g06130
rosa_chinensis	RchiOBHm_Chr4g0439241 RchiOBHm_Chr4g0439281
rosa_laevigata	RLG00000006285
rosa_multiflora	Rmu_sc0006598.1_g000011 Rmu_ssc0000171.1_g000023 Rmu_ssc0000171.1_g000024
rosa_roxburghii	Rroxscaffold_5G00380240
rosa_rugosa	Rorug04G0317200
rosa_samantha	Rh4AG367800 Rh4AG367900 Rh4BG379700 Rh4CG394000 Rh4DG374200
rosa_wichuraiana	Rw0G005610 Rw0G011620 Rw5G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	66, 216
AccB1I	GGYRCC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	2 cut(s)	117, 407
AclWI	GGATC	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	622, 676
AcuI	CTGAAG	2 cut(s)	256, 477
AfaI	GTAC	2 cut(s)	104, 182
AfiI	CCNNNNNNNGG	1 cut(s)	649
AgsI	TTSAA	2 cut(s)	137, 358
AjnI	CCWGG	1 cut(s)	581
AluBI	AGCT	3 cut(s)	94, 292, 505
AluI	AGCT	3 cut(s)	94, 292, 505
Alw21I	GWGCWC	2 cut(s)	294, 476
AlwI	GGATC	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	3 cut(s)	70, 233, 719
ApoI	RAATTY	2 cut(s)	622, 676
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	274, 346
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	294, 476
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	583
BfaI	CTAG	2 cut(s)	149, 766
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	36, 202
BmrFI	CCNGG	1 cut(s)	583
BmsI	GCATC	3 cut(s)	361, 418, 587
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	3 cut(s)	59, 250, 406
BsaBI	GATNNNNATC	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse3DI	GCAATG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	583
BseGI	GGATG	2 cut(s)	376, 578
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	377, 707
BseRI	GAGGAG	3 cut(s)	157, 264, 344
BseSI	GKGCMC	1 cut(s)	39
BshFI	GGCC	3 cut(s)	72, 235, 721
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	2 cut(s)	294, 476
BsiHKCI	CYCGRG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	649
BsnI	GGCC	3 cut(s)	72, 235, 721
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	39, 294, 476
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	544, 613
BspACI	CCGC	2 cut(s)	117, 407
BspANI	GGCC	3 cut(s)	72, 235, 721
BspCNI	CTCAG	2 cut(s)	378, 708
BspLI	GGNNCC	2 cut(s)	36, 202
BspPI	GGATC	1 cut(s)	552
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	180
BssMI	GATC	2 cut(s)	544, 613
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	95, 386, 506, 716
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	376, 578
BstKTI	GATC	2 cut(s)	547, 616
BstMBI	GATC	2 cut(s)	544, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	583
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	581
BstSLI	GKGCMC	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	72, 235, 721
BtsCI	GGATG	2 cut(s)	376, 578
BtsIMutI	CAGTG	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	103, 181
CviAII	CATG	2 cut(s)	58, 592
CviQI	GTAC	2 cut(s)	103, 181
DdeI	CTNAG	4 cut(s)	95, 386, 506, 716
DpnI	GATC	2 cut(s)	546, 615
DpnII	GATC	2 cut(s)	544, 613
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	256, 477
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	61, 595
FaiI	YATR	7 cut(s)	59, 66, 216, 589, 593, 647, 707
FatI	CATG	2 cut(s)	57, 591
FblI	GTMKAC	1 cut(s)	603
FokI	GGATG	2 cut(s)	383, 565
FriOI	GRGCYC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	149, 766
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	72, 235, 721
Hin1II	CATG	2 cut(s)	61, 595
HinfI	GANTC	3 cut(s)	403, 449, 518
HphI	GGTGA	2 cut(s)	274, 346
Hpy166II	GTNNAC	3 cut(s)	181, 183, 604
Hpy188I	TCNGA	4 cut(s)	241, 275, 613, 628
Hpy188III	TCNNGA	7 cut(s)	22, 76, 229, 413, 495, 522, 673
Hpy8I	GTNNAC	3 cut(s)	181, 183, 604
HpyAV	CCTTC	3 cut(s)	7, 239, 676
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	383, 482, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	4 cut(s)	95, 386, 506, 716
Hsp92II	CATG	2 cut(s)	61, 595
Kzo9I	GATC	2 cut(s)	544, 613
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	471
LpnPI	CCDG	8 cut(s)	326, 414, 480, 498, 507, 568, 595, 747
LweI	GCATC	3 cut(s)	361, 418, 587
MaeI	CTAG	2 cut(s)	149, 766
MaeIII	GTNAC	4 cut(s)	262, 437, 634, 711
MalI	GATC	2 cut(s)	546, 615
MboI	GATC	2 cut(s)	544, 613
MboII	GAAGA	3 cut(s)	262, 299, 412
MhlI	GDGCHC	3 cut(s)	39, 294, 476
MluCI	AATT	4 cut(s)	255, 323, 622, 676
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	583
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	2 cut(s)	544, 613
NlaIII	CATG	2 cut(s)	61, 595
NlaIV	GGNNCC	2 cut(s)	36, 202
NmuCI	GTSAC	2 cut(s)	262, 437
NspI	RCATGY	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	403, 449, 518
PsiI	TTATAA	2 cut(s)	66, 216
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	36, 202
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	2 cut(s)	104, 182
RsaNI	GTAC	2 cut(s)	103, 181
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	544, 613
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	3 cut(s)	39, 294, 476
SfaNI	GCATC	3 cut(s)	361, 418, 587
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	3 cut(s)	74, 229, 421
SmoI	CTYRAG	3 cut(s)	74, 229, 421
Sse9I	AATT	4 cut(s)	255, 323, 622, 676
SsiI	CCGC	2 cut(s)	117, 407
SspMI	CTAG	2 cut(s)	149, 766
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	561
TaqI	TCGA	2 cut(s)	21, 159
TasI	AATT	4 cut(s)	255, 323, 622, 676
TatI	WGTACW	2 cut(s)	102, 180
TfiI	GAWTC	3 cut(s)	403, 449, 518
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	262, 437
Tsp45I	GTSAC	2 cut(s)	262, 437
TspDTI	ATGAA	4 cut(s)	17, 413, 658, 722
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	2 cut(s)	622, 676
XceI	RCATGY	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	149, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.