Rroxscaffold_5G00380240

phosphate transporter PHO1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005261
Physical Location & Seq
Reverse (-)
60385664 .. 60386017
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380240.1

Sequence Viewer

Length: 354 bp
ATGAAGTTTGGGAAGGAGTTCAAGAAACAAATGGTGCCCGAGTGGGCAGAAGCCTACATGGATTATAATGGCCTCAAGAGGATATTGCGAGAGCTAAGAGAGTACAAGCAAAGTAAGCAGCACCCTGCTGTGACATCTTCTAGAGACTTAGAGCAGAAACCGCTTCCTGACGGAACATTGAATGGAGGAGGAGATGTCGAGGACCAAGTAATACATGTGAACACATTGCGTGGAGGTGGTTCCAAGCAGTTTCATAAGACCAAGTTCTTGAGGCAGTCAGAGGAAGGAGGAGAAATTGAGGTGACTGTCAAATCTGGTAATGTATTTGCTATATTCAAGCACACATACAACTGA

Protein Analysis

117

Amino Acids

13.39

Weight (kDa)

9.13

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 1 - 52 5.4e-16 SPX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 1 cut(s) 161
AfaI GTAC 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 3 cut(s) 22, 181, 337
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 141
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 36, 241
BpuEI CTTGAG 2 cut(s) 59, 289
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse3DI GCAATG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 224
BseRI GAGGAG 3 cut(s) 201, 204, 303
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 39
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 36, 241
BspT107I GGYRCC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 95, 148
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 115, 160
BstNSI RCATGY 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 58, 215
CviJI RGCY 3 cut(s) 53, 72, 94
CviKI_1 RGCY 3 cut(s) 53, 72, 94
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 95, 148
Eco47I GGWCC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 38
FaeI CATG 2 cut(s) 61, 218
FaiI YATR 6 cut(s) 59, 66, 216, 255, 332, 346
FatI CATG 2 cut(s) 57, 214
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 2 cut(s) 61, 218
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 5 cut(s) 22, 76, 141, 167, 268
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 7, 278
HpyCH4III ACNGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 160
HpyF3I CTNAG 2 cut(s) 95, 148
Hsp92II CATG 2 cut(s) 61, 218
LpnPI CCDG 3 cut(s) 138, 180, 300
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 130, 301
MboII GAAGA 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 115, 160
NlaIII CATG 2 cut(s) 61, 218
NlaIV GGNNCC 2 cut(s) 36, 241
NmuCI GTSAC 2 cut(s) 130, 301
NspI RCATGY 1 cut(s) 218
PciI ACATGT 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 120
PscI ACATGT 1 cut(s) 214
PsiI TTATAA 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 36, 241
PspPI GGNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SatI GCNGC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 96, 238, 303
SinI GGWCC 1 cut(s) 202
SmlI CTYRAG 2 cut(s) 74, 268
SmoI CTYRAG 2 cut(s) 74, 268
Sse9I AATT 1 cut(s) 294
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 294
TatI WGTACW 1 cut(s) 102
TseFI GTSAC 2 cut(s) 130, 301
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 2 cut(s) 130, 301
TspDTI ATGAA 2 cut(s) 17, 242
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 202
XbaI TCTAGA 1 cut(s) 140
XceI RCATGY 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.