RchiOBHm_Chr4g0439241

phosphate transporter PHO1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
61665646 .. 61669661
4016 bp
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UTR
Exon/CDS
Intron
PRQ40731

Sequence Viewer

Length: 1578 bp
ATGCCCCCCTCAGTTGCTGATCCACCACATGCTAACATTTCTAGAAGTGATAGCAGAGAGGTGTTGCATACCTATGACTATAGCCAAGATCCTCTGGAAATTCTTGAGGGTGTGAGAATTAATAATACACTAGAATCTTCAATATCAACCATCAAAGGTATTTTTAAGGACTCAAAAGAAGAGCAGTTGAGCTTTGATAAAGAGGAGCTGAGGAGAGCGGAAGAACGACCAAGGATGGCATTTATTGAATTTTACCATAAGCTTCAACTTCTAAAGCACTACAGGCTAGGTGACAAATATTTTATGAACCTCTCTGCATTTTCCAAGATTATGAAGAAGTACGAAAAGTCCTCATCAAGGAGAGCATCCAGGTCATACATGCAAATAGTAGACAACTCTGATCTTGGAAATTCTGATGAGGTTACTAACCTCATGGAGAGGGTGGAGGCTACCTTCATCAAGAATTTTTCACACTCAAATTGTAGAAAAGGTATGAAGTTACTGAGGCCAAAAGCAAAACGAGAGAAGCACAAAGTATCGTTTTTATCGGGTTTCTTTTCTGGCTGCTCAATTGCTCTACTGGTTGCTATTGTATTAAGAATACAAGCTCGAAAAATAATGAATAAGAAGGAGGGCACACAGTATATGGAAAACATTTTCCCACTTTACAGCGGGTTTCCTTGCAGTTTATTTGGATACATTGTCCTACATTTGCTCATGTATGCTGGCGATATATACTTCTGGAGGCGTTATCGGATAAACTATCCATTTATATTTGGTTTCGAGAAAGGAACTGAGTTGAGTTACCGAGAAGTTTTCCTTCTCAGCACTGGTCTTGCATTGATCCTTGTCGTCACCTTCTGCCCTTTCGACATCCTATACCGTTCAAGTCGTTTCTTCTTCACTCGGACCTTATTCCGCTGCATATGCGCCCCTCTTTACCCGATGCAAGCCTTGAGGAGTTTTGTGTTATACATCTGCTACTATGGTTTGGGAGAATATTCAAGGAGGCAAAGCAAGTGCCATGAGCACGGCGTCTACAATACTTTGTATATTGTTATTGCTTGCATTCGTCGACTGTGTGAAGAAAAGGATTTGAAGCACTTGTGCAATGGTTTAAAGTACTTTTCGACGATTGTTGCAGTTATCGTAAGAACTGTTTATGAGCTGAAAAAAGGAAAGACATCCTGGATGGTGTTAGCTTTGATCAGTTCTGCTGTTGCAACAATGATGAATACATATTGGGACATTGTAGTAGACTGGGGACTTCTACAAAAGCGATCAAAGAACAAATTTTTGAGAGATAGACTTCAAGTTTCACAGAAGAGCGTGTATTTTGCAGCTATAGTCTTGAATGTAATACTCAGACTTGCTTGGATGCAGTTGGTGTTGGAATTTAGATTGCCATCCCTTCATAAAATGACAGTAACAACCATCTATGCCTGCCTAGAGATCATTCGTCGTGACATGTGGAGCTTCTTCAGGTTAGAGAATGAGCACCTAAACAATGTAGGTCAGTACCGTGAGTTCAAGTCGGTCCCTCTTCCTTTCAGTTACAATGGCGAGGAGGATGATTGA

Protein Analysis

525

Amino Acids

61.66

Weight (kDa)

9.41

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 11 - 128 5.8e-21 SPX domain
EXS PF03124 227 - 285 6.6e-10 EXS family
EXS PF03124 280 - 501 7.6e-53 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 218
AccI GTMKAC 4 cut(s) 390, 1038, 1075, 1257
AciI CCGC 3 cut(s) 218, 672, 919
AclWI GGATC 3 cut(s) 14, 83, 838
AcsI RAATTY 6 cut(s) 99, 248, 409, 463, 1292, 1394
AcuI CTGAAG 1 cut(s) 1465
AcyI GRCGYC 1 cut(s) 1035
AfaI GTAC 3 cut(s) 341, 1124, 1520
AfiI CCNNNNNNNGG 1 cut(s) 357
AflIII ACRYGT 1 cut(s) 1467
AgsI TTSAA 9 cut(s) 141, 248, 266, 888, 1005, 1099, 1313, 1354, 1531
AjnI CCWGG 2 cut(s) 368, 1187
AluBI AGCT 8 cut(s) 192, 208, 262, 608, 1168, 1202, 1343, 1476
AluI AGCT 8 cut(s) 192, 208, 262, 608, 1168, 1202, 1343, 1476
Alw21I GWGCWC 2 cut(s) 1032, 1500
AlwI GGATC 3 cut(s) 14, 83, 838
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 1 cut(s) 506
ApeKI GCWGC 3 cut(s) 564, 921, 1340
ApoI RAATTY 6 cut(s) 99, 248, 409, 463, 1292, 1394
AseI ATTAAT 1 cut(s) 120
AspLEI GCGC 1 cut(s) 932
AspS9I GGNCC 2 cut(s) 909, 1537
AsuHPI GGTGA 2 cut(s) 302, 847
AvaII GGWCC 2 cut(s) 909, 1537
BaeGI GKGCMC 1 cut(s) 638
Bbv12I GWGCWC 2 cut(s) 1032, 1500
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 551, 908, 1352
BccI CCATC 5 cut(s) 158, 229, 1186, 1414, 1442
BceAI ACGGC 1 cut(s) 1048
BciT130I CCWGG 2 cut(s) 370, 1189
BciVI GTATCC 1 cut(s) 689
BclI TGATCA 1 cut(s) 1206
BfaI CTAG 4 cut(s) 42, 131, 287, 1448
BfmI CTRYAG 3 cut(s) 79, 280, 1344
BfuI GTATCC 1 cut(s) 689
BisI GCNGC 3 cut(s) 565, 922, 1341
BlsI GCNGC 3 cut(s) 566, 923, 1342
BmcAI AGTACT 1 cut(s) 1124
Bme1390I CCNGG 2 cut(s) 370, 1189
Bme18I GGWCC 2 cut(s) 909, 1537
BmgT120I GGNCC 2 cut(s) 909, 1537
BmiI GGNNCC 1 cut(s) 1539
BmrFI CCNGG 2 cut(s) 370, 1189
BmrI ACTGGG 1 cut(s) 1270
BmsI GCATC 3 cut(s) 374, 936, 1368
BmuI ACTGGG 1 cut(s) 1270
BpmI CTGGAG 1 cut(s) 763
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 125, 976
BsaBI GATNNNNATC 1 cut(s) 1405
BsaHI GRCGYC 1 cut(s) 1035
BsaJI CCNNGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse1I ACTGG 3 cut(s) 585, 835, 1265
Bse3DI GCAATG 1 cut(s) 1117
Bse8I GATNNNNATC 1 cut(s) 1405
BseBI CCWGG 2 cut(s) 370, 1189
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 8 cut(s) 240, 365, 873, 1184, 1197, 1383, 1406, 1576
BseJI GATNNNNATC 1 cut(s) 1405
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 1117
BseMII CTCAG 6 cut(s) 24, 200, 494, 786, 838, 1378
BseNI ACTGG 3 cut(s) 585, 835, 1265
BseRI GAGGAG 3 cut(s) 218, 226, 973
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 3 cut(s) 551, 908, 1352
BshFI GGCC 1 cut(s) 508
BsiHKAI GWGCWC 2 cut(s) 1032, 1500
BslFI GGGAC 3 cut(s) 1259, 1278, 1523
BslI CCNNNNNNNGG 1 cut(s) 357
BsmFI GGGAC 3 cut(s) 1259, 1278, 1523
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 638, 1032, 1500
Bsp143I GATC 7 cut(s) 19, 88, 400, 843, 1206, 1280, 1452
BspACI CCGC 3 cut(s) 218, 672, 919
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 6 cut(s) 23, 201, 495, 787, 837, 1377
BspLI GGNNCC 1 cut(s) 1539
BspPI GGATC 3 cut(s) 14, 83, 838
BspQI GCTCTTC 2 cut(s) 174, 1319
BsrBI CCGCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 1117
BsrI ACTGG 3 cut(s) 585, 835, 1265
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 7 cut(s) 19, 88, 400, 843, 1206, 1280, 1452
BssNI GRCGYC 1 cut(s) 1035
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 2 cut(s) 370, 1189
Bst4CI ACNGT 6 cut(s) 642, 884, 1080, 1159, 1426, 1523
Bst6I CTCTTC 3 cut(s) 174, 1319, 1548
BstACI GRCGYC 1 cut(s) 1035
BstC8I GCNNGC 4 cut(s) 727, 951, 1066, 1444
BstDEI CTNAG 6 cut(s) 10, 209, 503, 795, 824, 1364
BstENI CCTNNNNNAGG 1 cut(s) 355
BstF5I GGATG 8 cut(s) 240, 365, 873, 1184, 1197, 1383, 1406, 1576
BstHHI GCGC 1 cut(s) 932
BstKTI GATC 7 cut(s) 22, 91, 403, 846, 1209, 1283, 1455
BstMBI GATC 7 cut(s) 19, 88, 400, 843, 1206, 1280, 1452
BstMWI GCNNNNNNNGC 2 cut(s) 283, 927
BstNI CCWGG 2 cut(s) 370, 1189
BstNSI RCATGY 3 cut(s) 32, 382, 1471
BstSCI CCNGG 2 cut(s) 368, 1187
BstSFI CTRYAG 3 cut(s) 79, 280, 1344
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 3 cut(s) 551, 908, 1352
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 1 cut(s) 508
BtsCI GGATG 8 cut(s) 240, 365, 873, 1184, 1197, 1383, 1406, 1576
BtsIMutI CAGTG 1 cut(s) 828
Cac8I GCNNGC 4 cut(s) 727, 951, 1066, 1444
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 932
Cfr13I GGNCC 2 cut(s) 909, 1537
CseI GACGC 1 cut(s) 1024
Csp6I GTAC 3 cut(s) 340, 1123, 1519
CviAII CATG 6 cut(s) 29, 379, 433, 718, 1025, 1468
CviQI GTAC 3 cut(s) 340, 1123, 1519
DdeI CTNAG 6 cut(s) 10, 209, 503, 795, 824, 1364
DpnI GATC 7 cut(s) 21, 90, 402, 845, 1208, 1282, 1454
DpnII GATC 7 cut(s) 19, 88, 400, 843, 1206, 1280, 1452
DraI TTTAAA 1 cut(s) 1119
Eam1104I CTCTTC 3 cut(s) 174, 1319, 1548
EarI CTCTTC 3 cut(s) 174, 1319, 1548
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 909, 1537
Eco57I CTGAAG 1 cut(s) 1465
EcoNI CCTNNNNNAGG 1 cut(s) 355
EcoRII CCWGG 2 cut(s) 368, 1187
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 6 cut(s) 32, 382, 436, 721, 1028, 1471
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 3 cut(s) 1259, 1278, 1523
FatI CATG 6 cut(s) 28, 378, 432, 717, 1024, 1467
FauI CCCGC 1 cut(s) 665
FauNDI CATATG 1 cut(s) 926
FbaI TGATCA 1 cut(s) 1206
FblI GTMKAC 4 cut(s) 390, 1038, 1075, 1257
Fnu4HI GCNGC 3 cut(s) 565, 922, 1341
FokI GGATG 7 cut(s) 247, 352, 860, 1171, 1204, 1390, 1393
Fsp4HI GCNGC 3 cut(s) 565, 922, 1341
FspBI CTAG 4 cut(s) 42, 131, 287, 1448
GlaI GCGC 1 cut(s) 931
GluI GCNGC 3 cut(s) 565, 922, 1341
GsuI CTGGAG 1 cut(s) 763
HaeIII GGCC 1 cut(s) 508
HgaI GACGC 1 cut(s) 1024
HhaI GCGC 1 cut(s) 932
Hin1I GRCGYC 1 cut(s) 1035
Hin1II CATG 6 cut(s) 32, 382, 436, 721, 1028, 1471
Hin6I GCGC 1 cut(s) 930
HinP1I GCGC 1 cut(s) 930
HincII GTYRAC 1 cut(s) 1076
HindII GTYRAC 1 cut(s) 1076
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 2 cut(s) 134, 170
HphI GGTGA 2 cut(s) 302, 847
Hpy166II GTNNAC 4 cut(s) 391, 1039, 1076, 1258
Hpy188I TCNGA 5 cut(s) 400, 415, 756, 909, 1367
Hpy188III TCNNGA 8 cut(s) 42, 95, 104, 460, 742, 784, 1351, 1463
Hpy8I GTNNAC 4 cut(s) 391, 1039, 1076, 1258
Hpy99I CGWCG 3 cut(s) 1077, 1135, 1464
HpyAV CCTTC 5 cut(s) 463, 622, 830, 868, 1421
HpyCH4III ACNGT 6 cut(s) 642, 884, 1080, 1159, 1426, 1523
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 927
HpyF3I CTNAG 6 cut(s) 10, 209, 503, 795, 824, 1364
Hsp92I GRCGYC 1 cut(s) 1035
Hsp92II CATG 6 cut(s) 32, 382, 436, 721, 1028, 1471
HspAI GCGC 1 cut(s) 930
Ksp22I TGATCA 1 cut(s) 1206
Kzo9I GATC 7 cut(s) 19, 88, 400, 843, 1206, 1280, 1452
LguI GCTCTTC 2 cut(s) 174, 1319
LmnI GCTCC 2 cut(s) 205, 1473
Lsp1109I GCAGC 3 cut(s) 551, 908, 1352
LweI GCATC 3 cut(s) 374, 936, 1368
MaeI CTAG 4 cut(s) 42, 131, 287, 1448
MaeIII GTNAC 8 cut(s) 290, 421, 498, 803, 853, 1426, 1463, 1553
MalI GATC 7 cut(s) 21, 90, 402, 845, 1208, 1282, 1454
MbiI CCGCTC 1 cut(s) 218
MboI GATC 7 cut(s) 19, 88, 400, 843, 1206, 1280, 1452
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 3 cut(s) 638, 1032, 1500
MluCI AATT 9 cut(s) 99, 117, 248, 409, 463, 478, 570, 1292, 1394
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 1371
MseI TTAA 4 cut(s) 120, 165, 596, 1118
MslI CAYNNNNRTG 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 672, 921
MspR9I CCNGG 2 cut(s) 370, 1189
MunI CAATTG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 1068
MvaI CCWGG 2 cut(s) 370, 1189
MwoI GCNNNNNNNGC 2 cut(s) 283, 927
NdeI CATATG 1 cut(s) 926
NdeII GATC 7 cut(s) 19, 88, 400, 843, 1206, 1280, 1452
NlaIII CATG 6 cut(s) 32, 382, 436, 721, 1028, 1471
NlaIV GGNNCC 1 cut(s) 1539
NmuCI GTSAC 3 cut(s) 290, 853, 1463
NspI RCATGY 3 cut(s) 32, 382, 1471
PciI ACATGT 1 cut(s) 1467
PciSI GCTCTTC 2 cut(s) 174, 1319
PctI GAATGC 1 cut(s) 1068
PfeI GAWTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 1187
PkrI GCNGC 3 cut(s) 566, 923, 1342
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PscI ACATGT 1 cut(s) 1467
PshBI ATTAAT 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 368, 1187
PspGI CCWGG 2 cut(s) 368, 1187
PspN4I GGNNCC 1 cut(s) 1539
PspPI GGNCC 2 cut(s) 909, 1537
PsrI GAACNNNNNNTAC 2 cut(s) 1511, 1543
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 3 cut(s) 341, 1124, 1520
RsaNI GTAC 3 cut(s) 340, 1123, 1519
RseI CAYNNNNRTG 1 cut(s) 72
SalI GTCGAC 1 cut(s) 1074
SapI GCTCTTC 2 cut(s) 174, 1319
SaqAI TTAA 4 cut(s) 120, 165, 596, 1118
SatI GCNGC 3 cut(s) 565, 922, 1341
Sau3AI GATC 7 cut(s) 19, 88, 400, 843, 1206, 1280, 1452
Sau96I GGNCC 2 cut(s) 909, 1537
ScaI AGTACT 1 cut(s) 1124
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 370, 1189
SduI GDGCHC 3 cut(s) 638, 1032, 1500
SfaNI GCATC 3 cut(s) 374, 936, 1368
SfcI CTRYAG 3 cut(s) 79, 280, 1344
SinI GGWCC 2 cut(s) 909, 1537
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 104, 955
SmoI CTYRAG 2 cut(s) 104, 955
Sse9I AATT 9 cut(s) 99, 117, 248, 409, 463, 478, 570, 1292, 1394
SsiI CCGC 3 cut(s) 218, 672, 919
SspI AATATT 2 cut(s) 299, 1001
SspMI CTAG 4 cut(s) 42, 131, 287, 1448
StyD4I CCNGG 2 cut(s) 368, 1187
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 6 cut(s) 642, 884, 1080, 1159, 1426, 1523
TaqI TCGA 5 cut(s) 610, 783, 870, 1075, 1130
TaqII GACCGA 1 cut(s) 1525
TasI AATT 9 cut(s) 99, 117, 248, 409, 463, 478, 570, 1292, 1394
TatI WGTACW 1 cut(s) 1122
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 4 cut(s) 120, 165, 596, 1118
Tru9I TTAA 4 cut(s) 120, 165, 596, 1118
TscAI CASTG 1 cut(s) 835
TseFI GTSAC 3 cut(s) 290, 853, 1463
TseI GCWGC 3 cut(s) 564, 921, 1340
Tsp45I GTSAC 3 cut(s) 290, 853, 1463
TspDTI ATGAA 7 cut(s) 320, 347, 445, 509, 635, 1247, 1403
TspRI CASTG 1 cut(s) 835
VpaK11BI GGWCC 2 cut(s) 909, 1537
VspI ATTAAT 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 355
XapI RAATTY 6 cut(s) 99, 248, 409, 463, 1292, 1394
XbaI TCTAGA 1 cut(s) 41
XceI RCATGY 3 cut(s) 32, 382, 1471
XmiI GTMKAC 4 cut(s) 390, 1038, 1075, 1257
XspI CTAG 4 cut(s) 42, 131, 287, 1448
ZrmI AGTACT 1 cut(s) 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.