Rh4AG367900

phosphate transporter PHO1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005261
Physical Location & Seq
Reverse (-)
67550988 .. 67551182
195 bp
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UTR
Exon/CDS
Intron
Rh4AG367900.1

Sequence Viewer

Length: 195 bp
ATGAAGTTTGGGAAGGAGTTCAAGAAACAAATGGTGCCCGAGTGGTCAGAAGCCTACATGGATTATAATGGCCTCAAGAGGATATTGCGAGAGCTAAGAGAGTACAAGCAAAGTAAGCAGCACCCTGCTGTGACATCTTTTAGAGACTTTGAGCAGAAACTGCTTCCTGACGGAACATTGAATGGAGGAGGCTAG

Protein Analysis

64

Amino Acids

7.55

Weight (kDa)

9.35

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 1 - 42 1.3e-15 SPX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 34
AfaI GTAC 1 cut(s) 104
AgsI TTSAA 2 cut(s) 22, 181
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 193
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 39
BspANI GGCC 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 95
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 115, 160
BstSLI GKGCMC 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 160
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 53, 72, 94, 192
CviKI_1 RGCY 4 cut(s) 53, 72, 94, 192
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 38
FaeI CATG 1 cut(s) 61
FaiI YATR 2 cut(s) 59, 66
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 193
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 3 cut(s) 22, 76, 167
HpyAV CCTTC 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 160
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 61
LpnPI CCDG 2 cut(s) 138, 180
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 39
MnlI CCTC 4 cut(s) 72, 83, 179, 182
MroXI GAANNNNTTC 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 115, 160
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 120
PsiI TTATAA 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SatI GCNGC 1 cut(s) 119
SduI GDGCHC 1 cut(s) 39
SetI ASST 1 cut(s) 96
SgeI CNNG 9 cut(s) 34, 50, 52, 70, 88, 101, 118, 137, 179
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SspMI CTAG 1 cut(s) 193
TatI WGTACW 1 cut(s) 102
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.