Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000171.1

Orthogroup ID

OG0005261

Physical Location & Seq

Genomic Coordinates Forward (+)

75035 .. 75522

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000171.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgaagtttgggaaggagttcaagaaacaaatggtgcccgagtggtcagaagcctacatggattataatggcctcaagaggatattgcgagagctaagagagtacaagcaaagagatgtcgaggaccaagtaagagatgtgaacacattgcgtggaggtggttccaagcagttttataagaccaagttcttgaggccgtcagaggaaggaggagaaattgaggtgtcattcttcagaaaacttgacgaagagctcaacaaggtcaatacattttacaaggaaaaattggaggaggtgaagcaggaagcaagtcagttgaataaacaaatggacgctttggttgcactgaggattaagatgaagattccgcatcaagatggctcaagttcagggatcgaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

134

Amino Acids

15.82

Weight (kDa)

8.69

Isoelectric Point (pI)

67.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69480 AT1G69480
fragaria_vesca	FvH4_4g30940 FvH4_4g30940 FvH4_4g30940
malus_domestica	MD00G1081200.v1.1 MD00G1081400.v1.1
prunus_persica	Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1
pyrus_communis	pycom13g06130
rosa_chinensis	RchiOBHm_Chr4g0439241 RchiOBHm_Chr4g0439281
rosa_laevigata	RLG00000006285
rosa_multiflora	Rmu_sc0006598.1_g000011 Rmu_ssc0000171.1_g000023 Rmu_ssc0000171.1_g000024
rosa_roxburghii	Rroxscaffold_5G00380240
rosa_rugosa	Rorug04G0317200
rosa_samantha	Rh4AG367800 Rh4AG367900 Rh4BG379700 Rh4CG394000 Rh4DG374200
rosa_wichuraiana	Rw0G005610 Rw0G011620 Rw5G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	66, 177
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	22, 319
AluBI	AGCT	2 cut(s)	94, 253
AluI	AGCT	2 cut(s)	94, 253
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	70, 194
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	36, 163
BmsI	GCATC	1 cut(s)	379
BpuEI	CTTGAG	3 cut(s)	59, 211, 367
Bse3DI	GCAATG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	338
BseRI	GAGGAG	2 cut(s)	225, 305
BseSI	GKGCMC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	72, 196
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	72, 196
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	39, 255
Bsp143I	GATC	1 cut(s)	393
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	72, 196
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	36, 163
BspPI	GGATC	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	146
BssMI	GATC	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	95, 347
BstKTI	GATC	1 cut(s)	396
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstSLI	GKGCMC	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	72, 196
BtsIMutI	CAGTG	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	6 cut(s)	53, 72, 94, 196, 253, 381
CviKI_1	RGCY	6 cut(s)	53, 72, 94, 196, 253, 381
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	95, 347
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	59, 66, 177
FatI	CATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	72, 196
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	1 cut(s)	364
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	49, 202, 236
Hpy188III	TCNNGA	4 cut(s)	22, 76, 190, 374
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	7, 200
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	95, 347
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	393
LguI	GCTCTTC	1 cut(s)	243
LpnPI	CCDG	2 cut(s)	287, 375
LweI	GCATC	1 cut(s)	379
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	3 cut(s)	223, 260, 373
MhlI	GDGCHC	2 cut(s)	39, 255
MluCI	AATT	2 cut(s)	216, 284
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	36, 163
PciSI	GCTCTTC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	364
PsiI	TTATAA	2 cut(s)	66, 177
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	36, 163
PspPI	GGNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	1 cut(s)	124
SduI	GDGCHC	2 cut(s)	39, 255
SetI	ASST	7 cut(s)	96, 160, 225, 255, 264, 297, 402
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	3 cut(s)	74, 190, 382
SmoI	CTYRAG	3 cut(s)	74, 190, 382
Sse9I	AATT	2 cut(s)	216, 284
SsiI	CCGC	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	255
TaqI	TCGA	2 cut(s)	120, 396
TasI	AATT	2 cut(s)	216, 284
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	17, 374
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.