Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006598.1

Orthogroup ID

OG0005261

Physical Location & Seq

Genomic Coordinates Forward (+)

31369 .. 32423

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006598.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgaagtttgggaaggagttcaagaaacaaatggtgcccgagtggtcagaagcctacatggattataatggcctcaagaggatattgcgagagctaagagagtacaagcaaagagatgtcgaggaccaagtaagagatgtgaacacattgcgtggaggtggttccaagcagttttataagaccaagttcttgaggccgtcagaggaaggaggagaaattaaggtgtcattcttcagaaaacttgacgaagagctcaacaaggtcaatacattttacaaggaaaaattggaggaggtgaagcaggaagcaagtcagttgaataaacaaatggacgctttggttgcactgatgattaagatgaagattccgcatcaagatggctcaagagttgagcttagggcattggaatctgaagtaaaagaaaatgatcaggatcagcaagaaccatgccccccctcagttgccgatccaccacatgctaacatttctagaagtgatagcagagaggtgttgcatacctatgactatagacaagatcctctggaaattcttgagggtgtgagaattaataatacacttgaatcttcaatatcaaccatcaatggtgtttttaaggactcaaaagaagagcagttgagctttgataaagaggagctgaggagagcggaagaacgaccaagggtggcatttattgaattttaccataagcttcaacttctaaagcactacaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

244

Amino Acids

28.86

Weight (kDa)

6.07

Isoelectric Point (pI)

68.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69480 AT1G69480
fragaria_vesca	FvH4_4g30940 FvH4_4g30940 FvH4_4g30940
malus_domestica	MD00G1081200.v1.1 MD00G1081400.v1.1
prunus_persica	Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1 Prupe.1G278600_v2.0.a1
pyrus_communis	pycom13g06130
rosa_chinensis	RchiOBHm_Chr4g0439241 RchiOBHm_Chr4g0439281
rosa_laevigata	RLG00000006285
rosa_multiflora	Rmu_sc0006598.1_g000011 Rmu_ssc0000171.1_g000023 Rmu_ssc0000171.1_g000024
rosa_roxburghii	Rroxscaffold_5G00380240
rosa_rugosa	Rorug04G0317200
rosa_samantha	Rh4AG367800 Rh4AG367900 Rh4BG379700 Rh4CG394000 Rh4DG374200
rosa_wichuraiana	Rw0G005610 Rw0G011620 Rw5G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	66, 177
AccB1I	GGYRCC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	665
AciI	CCGC	2 cut(s)	368, 665
AclWI	GGATC	3 cut(s)	441, 461, 530
AcsI	RAATTY	2 cut(s)	546, 695
AcuI	CTGAAG	2 cut(s)	217, 432
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	6 cut(s)	22, 319, 581, 588, 695, 713
AluBI	AGCT	6 cut(s)	94, 253, 394, 639, 655, 709
AluI	AGCT	6 cut(s)	94, 253, 394, 639, 655, 709
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	441, 461, 530
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	70, 194
ApoI	RAATTY	2 cut(s)	546, 695
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	656
BccI	CCATC	2 cut(s)	371, 605
BceAI	ACGGC	1 cut(s)	181
BclI	TGATCA	1 cut(s)	427
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	526, 727
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	36, 163
BmsI	GCATC	1 cut(s)	379
Bpu10I	CCTNAGC	2 cut(s)	395, 656
BpuEI	CTTGAG	4 cut(s)	59, 211, 367, 572
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	677
Bse3DI	GCAATG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	677
BseJI	GATNNNNATC	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	471, 647
BseRI	GAGGAG	4 cut(s)	225, 305, 665, 673
BseSI	GKGCMC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	72, 196
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	72, 196
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	39, 255
Bsp143I	GATC	4 cut(s)	427, 433, 466, 535
BspACI	CCGC	2 cut(s)	368, 665
BspANI	GGCC	2 cut(s)	72, 196
BspCNI	CTCAG	2 cut(s)	470, 648
BspLI	GGNNCC	2 cut(s)	36, 163
BspPI	GGATC	3 cut(s)	441, 461, 530
BspQI	GCTCTTC	2 cut(s)	243, 621
BspT107I	GGYRCC	1 cut(s)	34
BsrBI	CCGCTC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	4 cut(s)	427, 433, 466, 535
BssT1I	CCWWGG	1 cut(s)	677
Bst6I	CTCTTC	2 cut(s)	243, 621
BstDEI	CTNAG	4 cut(s)	95, 395, 457, 656
BstKTI	GATC	4 cut(s)	430, 436, 469, 538
BstMBI	GATC	4 cut(s)	427, 433, 466, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	526, 727
BstSLI	GKGCMC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	72, 196
BtsIMutI	CAGTG	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	3 cut(s)	58, 447, 476
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	4 cut(s)	95, 395, 457, 656
DpnI	GATC	4 cut(s)	429, 435, 468, 537
DpnII	GATC	4 cut(s)	427, 433, 466, 535
Eam1104I	CTCTTC	2 cut(s)	243, 621
EarI	CTCTTC	2 cut(s)	243, 621
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	677
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	217, 432
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	677
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	677
FaeI	CATG	3 cut(s)	61, 450, 479
FaiI	YATR	9 cut(s)	59, 66, 177, 448, 477, 516, 522, 528, 705
FatI	CATG	3 cut(s)	57, 446, 475
FbaI	TGATCA	1 cut(s)	427
FriOI	GRGCYC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	72, 196
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	61, 450, 479
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	4 cut(s)	364, 407, 581, 617
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	49, 202, 236, 412
Hpy188III	TCNNGA	9 cut(s)	22, 76, 190, 374, 384, 431, 489, 542, 551
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	7, 200
HpyCH4V	TGCA	2 cut(s)	344, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	4 cut(s)	95, 395, 457, 656
Hsp92II	CATG	3 cut(s)	61, 450, 479
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	427, 433, 466, 535
LguI	GCTCTTC	2 cut(s)	243, 621
LmnI	GCTCC	1 cut(s)	652
LpnPI	CCDG	4 cut(s)	287, 416, 527, 715
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	489
MalI	GATC	4 cut(s)	429, 435, 468, 537
MbiI	CCGCTC	1 cut(s)	665
MboI	GATC	4 cut(s)	427, 433, 466, 535
MboII	GAAGA	6 cut(s)	223, 260, 373, 576, 638, 680
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	39, 255
MluCI	AATT	5 cut(s)	216, 284, 546, 564, 695
MlyI	GAGTC	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	4 cut(s)	219, 354, 567, 612
MslI	CAYNNNNRTG	2 cut(s)	375, 519
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	4 cut(s)	427, 433, 466, 535
NlaIII	CATG	3 cut(s)	61, 450, 479
NlaIV	GGNNCC	2 cut(s)	36, 163
NspI	RCATGY	1 cut(s)	479
PciSI	GCTCTTC	2 cut(s)	243, 621
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	364, 407, 581
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PshBI	ATTAAT	1 cut(s)	567
PsiI	TTATAA	2 cut(s)	66, 177
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	36, 163
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	2 cut(s)	375, 519
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	2 cut(s)	243, 621
SaqAI	TTAA	4 cut(s)	219, 354, 567, 612
Sau3AI	GATC	4 cut(s)	427, 433, 466, 535
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	611
SduI	GDGCHC	2 cut(s)	39, 255
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	2 cut(s)	526, 727
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	375, 519
SmlI	CTYRAG	4 cut(s)	74, 190, 382, 551
SmoI	CTYRAG	4 cut(s)	74, 190, 382, 551
Sse9I	AATT	5 cut(s)	216, 284, 546, 564, 695
SsiI	CCGC	2 cut(s)	368, 665
SspMI	CTAG	1 cut(s)	489
SstI	GAGCTC	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	677
TaqI	TCGA	1 cut(s)	120
TasI	AATT	5 cut(s)	216, 284, 546, 564, 695
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	3 cut(s)	364, 407, 581
Tru1I	TTAA	4 cut(s)	219, 354, 567, 612
Tru9I	TTAA	4 cut(s)	219, 354, 567, 612
TscAI	CASTG	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	17, 374
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	2 cut(s)	546, 695
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.