Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010326

Physical Location & Seq

Genomic Coordinates Reverse (-)

38166117 .. 38171030

Gene Structure 4914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1166700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2568 bp

ATGCCCTCAAACCACTCGGACTCCGACACCGACTCCGACCAGAGCCAATCTGGCTCCGGACCCGTTCGCCACTCGGATCTCTCCGACTCCATTTTCCGAACCTACTTGGAATTCACAGGAAAATCAACAGCGACTACGGCCGACCTCTCCAAGATCCAATCTTTCCTGACGTCATCCTCCTCCGGCGCTCTGTCATGCCTGATATGCCTGGAGCGGATCCGGCCCGCCGACCCGACATGGTCCTGCACCTCCGTCTGTTTCTCCGTCTTCCACCTCATATGCATCCAGAGCTGGGCGCGCCAGGCCTCCGATTTGTCCGCCTTGCGGGCCTCCACCCGCCTTCCCATTTCCGCCCAGAAAGCCGCCGAGGTATCAGTCTGGAACTGCCCCAAATGTAGGATAGAGTACCCCCATTCTCAAATCCCCAAGAATTATTACTGTTTCTGTGGAAAGCTCGAGAACCCACCGAGCGATGACCCGTGGGTTCTGCCGCATTCGTGCGGCGAGGTCTGCAACCGGCCGCTGAAGCACGGCTGTGGCCACCATTGCTTGCTTCTTTGCCACCCGGGTCCCTGCCCGTCCTGCCCGAAGCTCGTAGAATCTCGGTGCTTTTGTGGGTATTGGCTTGTGGGATCCACCGGTGCTCGGAGATTTGCCACCAGGGGCCCTGCTTGCCGTGCCGGGTGCGGGGAGTGTACCGGTGCCAATGTGGGAAGAAGGAGGAGGAGAAGGAGTGTTTGTGAGCGGCTTGATTTTAGGTGTGAGGAGCCGTGCGAGAAGGTGCTTGGCTGTGGGCAGCATAAGTGTACCAAAGGGTGTCATTTGGGGGAGTGCGGGCCGTGCCCGTCCCAGGGGAAGAGGACATGCCCCTGTGGAAAGAGAATGCATGAGGGATTGTCTTGCAAAGCCTCTGTGCCTTTGTGTGGTTCAACTTGTGATAAGATGCTCAGTTGCGGCTACCATAGGTGCCCGGAGAGGTGTCATCGTGGGGAGTGCATTGAGACTTGCAGAACAGTTGTCATTAAGTATTGCCGGTGCGGGAGCTTGAAAAAGGAGGTTCCTTGCCATCAAGATTTAGCATGCGAAAGGAAGTGCCAGAGACTAAGGGACTGTGGGCGGCATGCTTGTAAGCGCAGGTGCTGTGATGGGGACTGCCCACCGTGCTCAGAGGTTTGTGTTCCTCGTTCGGCTTCTGATTTTAGATTTGTGGAAGAAAGCTACGATGTAGGAAACCACAAGTGCCCATCTCCATGCCATAGAGGTGCTTGTGCTCCGTGCCCAGTGATGGTGACAATTACATGTGCATGCGGTCAGACACACTTTGAGGTTCCTTGCGGTACTGAGATGGATCAAAAGCCTCCCAGATGTCGTAAGCCATGCCCTATTACTCCTTTATGCAGGCATGGACCAAATTCCAAGCCACATAAATGCCATTATGGAGCCTGCCACCCGTGTAGATTACTTTGTGAGGAAGAATACCCATGTGGCCACAATTGCAAGCTAAGGTGTCATGGTCCTAAACCTCCTCCGAATCCGGAATTTACGTTGAAACCTAAGAAGAAGAAATCCTTTCATCAGAGTGAATCCACTCCAGGATCTCCATGCCCTCCATGCCCAGAACTTGTTTGGAGGTCATGTGTTGGCCAGCACATCGGGGCAGATAAAATGATGATCTGCTCAGATAAAACACTATTTTCCTGCGAAAACTTGTGCGGAAATCCTCTACCTTGTGGTAATCACTTTTGCACAAAAACTTGTCACCCCCTCAAGAATCAAACGGTGCCATCAGTCCGACAAGCAAGAAGTGAGCCTTGTGAGAAGTGTCAACTTCCTTGCAAAAAGGAGAGGGAGCCTGCATGTCCTCATCCTTGTCCTTTGCCATGTCATCCTGGAGACTGCCCTCCTTGCAAGGTGCTTGTAAAGCGATCGTGTCACTGTGGTTCCATGGTTCATGTTTTTGAGTGCATATATTTTAACAGCTTGTCCGAAAAGGAGCAAATGGCTGCTCGTTCATGTAAGGGGCCTTGTCACAGAAAGTTGCCGTATTGTACTCATCTGTGCCCAGAGATTTGTCATCCTGGTCAATGTTCATCACCCGAAAAGTGCTCTAAAAAGGTTACTGTCCGTTGTGGATGCCAGAGCTTGAAAAAGGAGTGGTTATGTCACAATGTTCAGGCAGCCTATCGCGATGCTGGTTCTGATCCCAAAGATGTATTTAAGAATCAATTTGGACTTGGACTCATTCCTTGCAATTCCGACTGCAAAAGCAAACAAAAGGTTAATGATTCAGAATTACAGTTGCGTAGACCTAAATCTGTGGAGGTGAAGGAATCAGATAATGATAGGCAAGGACCAAAGCGGAAGAAAAGGCGTGAGCGGTTGCAACAAGTGACACAAACCTCGACACTGCAAAAAATTATTTCCAACGTGAAACGGTGTCTTCTAGTTTTCACCCTCCTGGTGGTTTTAGTTGCTGTATCATACTACGGATACAAGGGTCTCCTCCGGCTTAATGATTGGATGAATGAAGTTGAAGAGAATCGACAAAGAAGATACCCCCGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-NF-X1

Protein Analysis

856

Amino Acids

95.33

Weight (kDa)

8.85

Isoelectric Point (pI)

64.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05660
fragaria_vesca	FvH4_7g24480
malus_domestica	MD00G1166700.v1.1 MD07G1222000.v1.1
prunus_persica	Prupe.2G250200_v2.0.a1
pyrus_communis	pycom07g20050
rosa_chinensis	RchiOBHm_Chr1g0370241
rosa_laevigata	RLG00000027066
rosa_multiflora	Rmu_co8251429.1_g000001 Rmu_co8258023.1_g000001 Rmu_sc0018500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286720 Rroxscaffold_4G00287290
rosa_rugosa	Rorug01G0354900 Rorug01G0355000 Rorug01G0355100
rosa_samantha	Rh1AG363700 Rh1BG326800 Rh1CG340100 Rh1DG357200
rosa_wichuraiana	Rw1G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1125
AatII	GACGTC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	1125
AccB1I	GGYRCC	3 cut(s)	701, 966, 1780
AccBSI	CCGCTC	3 cut(s)	214, 745, 2377
AccI	GTMKAC	1 cut(s)	2305
AccII	CGCG	2 cut(s)	298, 2187
AccIII	TCCGGA	2 cut(s)	56, 1534
AclWI	GGATC	9 cut(s)	84, 148, 211, 224, 627, 640, 1356, 1603, 2195
AcoI	YGGCCR	5 cut(s)	138, 518, 538, 1486, 1642
AcsI	RAATTY	3 cut(s)	110, 1411, 1538
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	5 cut(s)	407, 697, 808, 1339, 2050
AflIII	ACRYGT	1 cut(s)	1298
AgeI	ACCGGT	2 cut(s)	638, 698
AgsI	TTSAA	5 cut(s)	930, 1048, 1549, 2146, 2534
AjnI	CCWGG	8 cut(s)	207, 300, 659, 849, 1591, 1888, 2077, 2457
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	8 cut(s)	291, 454, 592, 1044, 1218, 1501, 1980, 2142
AluI	AGCT	8 cut(s)	291, 454, 592, 1044, 1218, 1501, 1980, 2142
Alw21I	GWGCWC	4 cut(s)	646, 1166, 1273, 2108
Alw26I	GTCTC	4 cut(s)	995, 1093, 1887, 2504
AlwI	GGATC	9 cut(s)	84, 148, 211, 224, 627, 640, 1356, 1603, 2195
AlwNI	CAGNNNCTG	1 cut(s)	1140
Ama87I	CYCGRG	2 cut(s)	455, 565
Aor13HI	TCCGGA	2 cut(s)	56, 1534
ApaI	GGGCCC	1 cut(s)	668
ApeKI	GCWGC	3 cut(s)	796, 2003, 2177
ApoI	RAATTY	3 cut(s)	110, 1411, 1538
AscI	GGCGCGCC	1 cut(s)	296
AsiGI	ACCGGT	2 cut(s)	638, 698
AspLEI	GCGC	4 cut(s)	188, 298, 300, 1134
AsuC2I	CCSGG	4 cut(s)	566, 567, 682, 971
AsuHPI	GGTGA	5 cut(s)	1300, 1751, 2085, 2335, 2443
AvaI	CYCGRG	2 cut(s)	455, 565
AvaII	GGWCC	6 cut(s)	59, 240, 569, 1406, 1514, 2351
BaeGI	GKGCMC	6 cut(s)	668, 845, 971, 1244, 1280, 2063
BaeI	ACNNNNGTAYC	2 cut(s)	2482, 2515
BalI	TGGCCA	3 cut(s)	540, 1488, 1644
BamHI	GGATCC	2 cut(s)	216, 632
BanI	GGYRCC	3 cut(s)	701, 966, 1780
BanII	GRGCYC	1 cut(s)	668
BbsI	GAAGAC	2 cut(s)	259, 2432
Bbv12I	GWGCWC	4 cut(s)	646, 1166, 1273, 2108
BbvI	GCAGC	3 cut(s)	808, 1990, 2189
BccI	CCATC	6 cut(s)	1074, 1139, 1252, 1279, 1339, 1792
BceAI	ACGGC	6 cut(s)	153, 547, 660, 754, 823, 2026
BciT130I	CCWGG	8 cut(s)	209, 302, 661, 851, 1593, 1890, 2079, 2459
BciVI	GTATCC	1 cut(s)	2483
BcnI	CCSGG	4 cut(s)	566, 567, 682, 971
BcoDI	GTCTC	4 cut(s)	995, 1093, 1887, 2504
BfaI	CTAG	1 cut(s)	2444
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	1125
BfuI	GTATCC	1 cut(s)	2483
BglI	GCCNNNNNGGC	2 cut(s)	51, 326
Bme18I	GGWCC	6 cut(s)	59, 240, 569, 1406, 1514, 2351
BmeT110I	CYCGRG	2 cut(s)	455, 565
BmrI	ACTGGG	1 cut(s)	1274
BmsI	GCATC	4 cut(s)	291, 933, 2123, 2179
BmuI	ACTGGG	1 cut(s)	1274
BpiI	GAAGAC	2 cut(s)	259, 2432
BpmI	CTGGAG	3 cut(s)	230, 1575, 1911
Bpu10I	CCTNAGC	1 cut(s)	1502
BpuEI	CTTGAG	1 cut(s)	1751
BpuMI	CCSGG	4 cut(s)	566, 567, 682, 971
BsaHI	GRCGYC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	2504
BsaJI	CCNNGG	7 cut(s)	366, 479, 565, 660, 849, 850, 1944
BsaWI	WCCGGW	4 cut(s)	56, 638, 698, 1534
Bse118I	RCCGGY	4 cut(s)	516, 638, 698, 1032
Bse1I	ACTGG	1 cut(s)	1280
Bse3DI	GCAATG	1 cut(s)	544
BseAI	TCCGGA	2 cut(s)	56, 1534
BseBI	CCWGG	8 cut(s)	209, 302, 661, 851, 1593, 1890, 2079, 2459
BseDI	CCNNGG	7 cut(s)	366, 479, 565, 660, 849, 850, 1944
BseGI	GGATG	7 cut(s)	173, 282, 1864, 1885, 2074, 2138, 2526
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	4 cut(s)	961, 1179, 1332, 1692
BseNI	ACTGG	1 cut(s)	1280
BsePI	GCGCGC	1 cut(s)	296
BseRI	GAGGAG	6 cut(s)	169, 736, 739, 779, 1515, 2492
BseSI	GKGCMC	6 cut(s)	668, 845, 971, 1244, 1280, 2063
BseX3I	CGGCCG	2 cut(s)	138, 518
BseXI	GCAGC	3 cut(s)	808, 1990, 2189
BseYI	CCCAGC	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	229
Bsh1236I	CGCG	2 cut(s)	298, 2187
Bsh1285I	CGRYCG	3 cut(s)	141, 521, 1928
BshNI	GGYRCC	3 cut(s)	701, 966, 1780
BshTI	ACCGGT	2 cut(s)	638, 698
BsiEI	CGRYCG	3 cut(s)	141, 521, 1928
BsiHKAI	GWGCWC	4 cut(s)	646, 1166, 1273, 2108
BsiHKCI	CYCGRG	2 cut(s)	455, 565
BslFI	GGGAC	4 cut(s)	555, 832, 1121, 1163
BsmAI	GTCTC	4 cut(s)	995, 1093, 1887, 2504
BsmFI	GGGAC	4 cut(s)	555, 832, 1121, 1163
BsmI	GAATGC	2 cut(s)	493, 888
Bso31I	GGTCTC	1 cut(s)	2504
BsoBI	CYCGRG	2 cut(s)	455, 565
Bsp120I	GGGCCC	1 cut(s)	664
Bsp13I	TCCGGA	2 cut(s)	56, 1534
Bsp143I	GATC	9 cut(s)	76, 153, 216, 632, 1348, 1595, 1671, 1925, 2200
Bsp19I	CCATGG	1 cut(s)	1944
Bsp68I	TCGCGA	1 cut(s)	2187
BspCNI	CTCAG	4 cut(s)	960, 1178, 1333, 1691
BspEI	TCCGGA	2 cut(s)	56, 1534
BspFNI	CGCG	2 cut(s)	298, 2187
BspMI	ACCTGC	1 cut(s)	1125
BspPI	GGATC	9 cut(s)	84, 148, 211, 224, 627, 640, 1356, 1603, 2195
BspT107I	GGYRCC	3 cut(s)	701, 966, 1780
BspTNI	GGTCTC	1 cut(s)	2504
BsrBI	CCGCTC	3 cut(s)	214, 745, 2377
BsrDI	GCAATG	1 cut(s)	544
BsrFI	RCCGGY	4 cut(s)	516, 638, 698, 1032
BsrI	ACTGG	1 cut(s)	1280
BssAI	RCCGGY	4 cut(s)	516, 638, 698, 1032
BssECI	CCNNGG	7 cut(s)	366, 479, 565, 660, 849, 850, 1944
BssHII	GCGCGC	1 cut(s)	296
BssMI	GATC	9 cut(s)	76, 153, 216, 632, 1348, 1595, 1671, 1925, 2200
BssNI	GRCGYC	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	1944
Bst2UI	CCWGG	8 cut(s)	209, 302, 661, 851, 1593, 1890, 2079, 2459
Bst4CI	ACNGT	9 cut(s)	440, 1015, 1112, 1161, 1780, 1937, 2122, 2298, 2436
Bst6I	CTCTTC	2 cut(s)	851, 2529
BstACI	GRCGYC	1 cut(s)	170
BstDEI	CTNAG	7 cut(s)	947, 1103, 1165, 1341, 1502, 1554, 1678
BstDSI	CCRYGG	2 cut(s)	479, 1944
BstF5I	GGATG	7 cut(s)	173, 282, 1864, 1885, 2074, 2138, 2526
BstFNI	CGCG	2 cut(s)	298, 2187
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	4 cut(s)	188, 298, 300, 1134
BstKTI	GATC	9 cut(s)	79, 156, 219, 635, 1351, 1598, 1674, 1928, 2203
BstMAI	GTCTC	4 cut(s)	995, 1093, 1887, 2504
BstMBI	GATC	9 cut(s)	76, 153, 216, 632, 1348, 1595, 1671, 1925, 2200
BstMCI	CGRYCG	3 cut(s)	141, 521, 1928
BstNI	CCWGG	8 cut(s)	209, 302, 661, 851, 1593, 1890, 2079, 2459
BstNSI	RCATGY	6 cut(s)	867, 1083, 1124, 1302, 1308, 1860
BstSLI	GKGCMC	6 cut(s)	668, 845, 971, 1244, 1280, 2063
BstUI	CGCG	2 cut(s)	298, 2187
BstV1I	GCAGC	3 cut(s)	808, 1990, 2189
BstV2I	GAAGAC	2 cut(s)	259, 2432
BstX2I	RGATCY	5 cut(s)	76, 153, 216, 632, 1595
BstYI	RGATCY	5 cut(s)	76, 153, 216, 632, 1595
BstZI	CGGCCG	2 cut(s)	138, 518
BsuI	GTATCC	1 cut(s)	2483
BtgI	CCRYGG	2 cut(s)	479, 1944
BtgZI	GCGATG	2 cut(s)	486, 2202
BtsCI	GGATG	7 cut(s)	173, 282, 1864, 1885, 2074, 2138, 2526
BtsI	GCAGTG	1 cut(s)	2405
BtsIMutI	CAGTG	3 cut(s)	1287, 1933, 2405
BtuMI	TCGCGA	1 cut(s)	2187
BveI	ACCTGC	1 cut(s)	1125
CaiI	CAGNNNCTG	1 cut(s)	1140
CfoI	GCGC	4 cut(s)	188, 298, 300, 1134
Cfr10I	RCCGGY	4 cut(s)	516, 638, 698, 1032
Cfr9I	CCCGGG	1 cut(s)	565
Csp6I	GTAC	5 cut(s)	406, 696, 807, 1338, 2049
CspAI	ACCGGT	2 cut(s)	638, 698
CviQI	GTAC	5 cut(s)	406, 696, 807, 1338, 2049
DdeI	CTNAG	7 cut(s)	947, 1103, 1165, 1341, 1502, 1554, 1678
DpnI	GATC	9 cut(s)	78, 155, 218, 634, 1350, 1597, 1673, 1927, 2202
DpnII	GATC	9 cut(s)	76, 153, 216, 632, 1348, 1595, 1671, 1925, 2200
EaeI	YGGCCR	5 cut(s)	138, 518, 538, 1486, 1642
EagI	CGGCCG	2 cut(s)	138, 518
Eam1104I	CTCTTC	2 cut(s)	851, 2529
EarI	CTCTTC	2 cut(s)	851, 2529
EciI	GGCGGA	2 cut(s)	307, 340
EclXI	CGGCCG	2 cut(s)	138, 518
Eco130I	CCWWGG	1 cut(s)	1944
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	668
Eco31I	GGTCTC	1 cut(s)	2504
Eco47I	GGWCC	6 cut(s)	59, 240, 569, 1406, 1514, 2351
Eco52I	CGGCCG	2 cut(s)	138, 518
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	2 cut(s)	455, 565
EcoO109I	RGGNCCY	4 cut(s)	569, 664, 665, 2021
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	8 cut(s)	207, 300, 659, 849, 1591, 1888, 2077, 2457
EcoT14I	CCWWGG	1 cut(s)	1944
EcoT22I	ATGCAT	2 cut(s)	284, 888
EcoT38I	GRGCYC	1 cut(s)	668
ErhI	CCWWGG	1 cut(s)	1944
FalI	AAGNNNNNCTT	4 cut(s)	1553, 1585, 1795, 1827
FaqI	GGGAC	4 cut(s)	555, 832, 1121, 1163
FauI	CCCGC	6 cut(s)	232, 318, 344, 680, 827, 1031
FauNDI	CATATG	1 cut(s)	278
FblI	GTMKAC	1 cut(s)	2305
FokI	GGATG	7 cut(s)	160, 269, 1851, 1872, 2061, 2145, 2533
FriOI	GRGCYC	1 cut(s)	668
FspBI	CTAG	1 cut(s)	2444
GlaI	GCGC	4 cut(s)	187, 297, 299, 1133
GsaI	CCCAGC	1 cut(s)	295
GsuI	CTGGAG	3 cut(s)	230, 1575, 1911
HaeII	RGCGCY	1 cut(s)	189
HhaI	GCGC	4 cut(s)	188, 298, 300, 1134
Hin1I	GRCGYC	1 cut(s)	170
Hin6I	GCGC	4 cut(s)	186, 296, 298, 1132
HinP1I	GCGC	4 cut(s)	186, 296, 298, 1132
HincII	GTYRAC	1 cut(s)	1826
HindII	GTYRAC	1 cut(s)	1826
HphI	GGTGA	5 cut(s)	1300, 1751, 2085, 2335, 2443
Hpy166II	GTNNAC	4 cut(s)	696, 807, 1826, 2306
Hpy188III	TCNNGA	9 cut(s)	57, 166, 286, 379, 457, 1070, 1535, 1768, 2186
Hpy8I	GTNNAC	4 cut(s)	696, 807, 1826, 2306
HpyAV	CCTTC	5 cut(s)	350, 711, 723, 772, 2320
HpyCH4III	ACNGT	9 cut(s)	440, 1015, 1112, 1161, 1780, 1937, 2122, 2298, 2436
HpyCH4IV	ACGT	3 cut(s)	170, 1544, 2427
HpyF3I	CTNAG	7 cut(s)	947, 1103, 1165, 1341, 1502, 1554, 1678
HpySE526I	ACGT	3 cut(s)	170, 1544, 2427
Hsp92I	GRCGYC	1 cut(s)	170
HspAI	GCGC	4 cut(s)	186, 296, 298, 1132
KflI	GGGWCCC	1 cut(s)	569
Kpn2I	TCCGGA	2 cut(s)	56, 1534
Kzo9I	GATC	9 cut(s)	76, 153, 216, 632, 1348, 1595, 1671, 1925, 2200
LmnI	GCTCC	8 cut(s)	59, 211, 766, 1041, 1276, 1439, 1849, 1993
Lsp1109I	GCAGC	3 cut(s)	808, 1990, 2189
LweI	GCATC	4 cut(s)	291, 933, 2123, 2179
MaeI	CTAG	1 cut(s)	2444
MaeII	ACGT	3 cut(s)	170, 1544, 2427
MaeIII	GTNAC	7 cut(s)	1288, 1757, 1931, 2027, 2116, 2162, 2389
MalI	GATC	9 cut(s)	78, 155, 218, 634, 1350, 1597, 1673, 1927, 2202
MbiI	CCGCTC	3 cut(s)	214, 745, 2377
MboI	GATC	9 cut(s)	76, 153, 216, 632, 1348, 1595, 1671, 1925, 2200
MfeI	CAATTG	1 cut(s)	1492
MflI	RGATCY	5 cut(s)	76, 153, 216, 632, 1595
MlsI	TGGCCA	3 cut(s)	540, 1488, 1644
MluNI	TGGCCA	3 cut(s)	540, 1488, 1644
MlyI	GAGTC	4 cut(s)	14, 26, 80, 2232
MmeI	TCCRAC	6 cut(s)	48, 60, 108, 1816, 2280, 2448
Mox20I	TGGCCA	3 cut(s)	540, 1488, 1644
Mph1103I	ATGCAT	2 cut(s)	284, 888
MroI	TCCGGA	2 cut(s)	56, 1534
MscI	TGGCCA	3 cut(s)	540, 1488, 1644
MseI	TTAA	5 cut(s)	1023, 1974, 2217, 2280, 2511
MslI	CAYNNNNRTG	6 cut(s)	534, 1249, 1260, 1303, 1426, 1578
Msp20I	TGGCCA	3 cut(s)	540, 1488, 1644
MspA1I	CMGCKG	1 cut(s)	523
MunI	CAATTG	1 cut(s)	1492
Mva1269I	GAATGC	2 cut(s)	493, 888
MvaI	CCWGG	8 cut(s)	209, 302, 661, 851, 1593, 1890, 2079, 2459
MvnI	CGCG	2 cut(s)	298, 2187
NciI	CCSGG	4 cut(s)	566, 567, 682, 971
NcoI	CCATGG	1 cut(s)	1944
NdeI	CATATG	1 cut(s)	278
NdeII	GATC	9 cut(s)	76, 153, 216, 632, 1348, 1595, 1671, 1925, 2200
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	6 cut(s)	1288, 1757, 1931, 2027, 2162, 2389
NruI	TCGCGA	1 cut(s)	2187
NsiI	ATGCAT	2 cut(s)	284, 888
NspI	RCATGY	6 cut(s)	867, 1083, 1124, 1302, 1308, 1860
OliI	CACNNNNGTG	1 cut(s)	534
PaeI	GCATGC	3 cut(s)	1083, 1124, 1308
PaeR7I	CTCGAG	1 cut(s)	455
PalAI	GGCGCGCC	1 cut(s)	296
PaqCI	CACCTGC	1 cut(s)	1125
PasI	CCCWGGG	1 cut(s)	850
PauI	GCGCGC	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	305
PciI	ACATGT	1 cut(s)	1298
PctI	GAATGC	2 cut(s)	493, 888
PfeI	GAWTC	9 cut(s)	599, 1531, 1583, 1771, 2221, 2285, 2330, 2539, 2562
PflFI	GACNNNGTC	1 cut(s)	238
PfoI	TCCNGGA	2 cut(s)	1591, 1888
PinAI	ACCGGT	2 cut(s)	638, 698
Ple19I	CGATCG	1 cut(s)	1928
PleI	GAGTC	4 cut(s)	14, 26, 80, 2232
PpsI	GAGTC	4 cut(s)	14, 26, 80, 2232
PpuMI	RGGWCCY	1 cut(s)	569
PscI	ACATGT	1 cut(s)	1298
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	8 cut(s)	207, 300, 659, 849, 1591, 1888, 2077, 2457
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	8 cut(s)	207, 300, 659, 849, 1591, 1888, 2077, 2457
PspOMI	GGGCCC	1 cut(s)	664
PspPPI	RGGWCCY	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	1140
PsuI	RGATCY	5 cut(s)	76, 153, 216, 632, 1595
PsyI	GACNNNGTC	1 cut(s)	238
PteI	GCGCGC	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	1928
RruI	TCGCGA	1 cut(s)	2187
RsaI	GTAC	5 cut(s)	407, 697, 808, 1339, 2050
RsaNI	GTAC	5 cut(s)	406, 696, 807, 1338, 2049
RseI	CAYNNNNRTG	6 cut(s)	534, 1249, 1260, 1303, 1426, 1578
SaqAI	TTAA	5 cut(s)	1023, 1974, 2217, 2280, 2511
Sau3AI	GATC	9 cut(s)	76, 153, 216, 632, 1348, 1595, 1671, 1925, 2200
SchI	GAGTC	4 cut(s)	14, 26, 80, 2232
SfaNI	GCATC	4 cut(s)	291, 933, 2123, 2179
Sfr274I	CTCGAG	1 cut(s)	455
SgrAI	CRCCGGYG	1 cut(s)	638
SgsI	GGCGCGCC	1 cut(s)	296
SinI	GGWCC	6 cut(s)	59, 240, 569, 1406, 1514, 2351
SlaI	CTCGAG	1 cut(s)	455
SmaI	CCCGGG	1 cut(s)	567
SmiMI	CAYNNNNRTG	6 cut(s)	534, 1249, 1260, 1303, 1426, 1578
SmlI	CTYRAG	2 cut(s)	455, 1766
SmoI	CTYRAG	2 cut(s)	455, 1766
SphI	GCATGC	3 cut(s)	1083, 1124, 1308
SseBI	AGGCCT	1 cut(s)	305
SspMI	CTAG	1 cut(s)	2444
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	1944
TaaI	ACNGT	9 cut(s)	440, 1015, 1112, 1161, 1780, 1937, 2122, 2298, 2436
TaiI	ACGT	3 cut(s)	173, 1547, 2430
TaqI	TCGA	3 cut(s)	456, 2402, 2542
TatI	WGTACW	1 cut(s)	2048
TauI	GCSGC	7 cut(s)	365, 493, 504, 523, 748, 957, 1120
TfiI	GAWTC	9 cut(s)	599, 1531, 1583, 1771, 2221, 2285, 2330, 2539, 2562
Tru1I	TTAA	5 cut(s)	1023, 1974, 2217, 2280, 2511
Tru9I	TTAA	5 cut(s)	1023, 1974, 2217, 2280, 2511
TscAI	CASTG	3 cut(s)	1287, 1940, 2412
TseFI	GTSAC	6 cut(s)	1288, 1757, 1931, 2027, 2162, 2389
TseI	GCWGC	3 cut(s)	796, 2003, 2177
Tsp45I	GTSAC	6 cut(s)	1288, 1757, 1931, 2027, 2162, 2389
TspDTI	ATGAA	6 cut(s)	1562, 1940, 2001, 2079, 2537, 2541
TspGWI	ACGGA	5 cut(s)	241, 253, 1263, 2114, 2502
TspMI	CCCGGG	1 cut(s)	565
TspRI	CASTG	3 cut(s)	1287, 1940, 2412
Tth111I	GACNNNGTC	1 cut(s)	238
VpaK11BI	GGWCC	6 cut(s)	59, 240, 569, 1406, 1514, 2351
XapI	RAATTY	3 cut(s)	110, 1411, 1538
XceI	RCATGY	6 cut(s)	867, 1083, 1124, 1302, 1308, 1860
XcmI	CCANNNNNNNNNTGG	2 cut(s)	47, 1623
XhoI	CTCGAG	1 cut(s)	455
XmaI	CCCGGG	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	2305
XspI	CTAG	1 cut(s)	2444
ZraI	GACGTC	1 cut(s)	171
Zsp2I	ATGCAT	2 cut(s)	284, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.