Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010326

Physical Location & Seq

Genomic Coordinates Forward (+)

59737309 .. 59742123

Gene Structure 4815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGAGCTCGGACTCCGATTCCGATTCCGATCACAGCGAATCCGGATCCGGATCCGGATCCACACCGGCCCGCCGCCACTCGGACCTATCCGACTCCATTTTCCGATCCTACTTAGAATTCACTGGAAAAACCTCCGCCACCAACGCCGACCTCTCCAAGATCCAGTCCTTCCTGACCTCATCCTCCTCCGGCGCTCTGTCATGCCTCATATGCCTGGAGCGGATCCGACCCGGGGACCCGACGTGGTCCTGCACCTCCGTCTGCTTCTCCGTCTTCCACCTCTTCTGCATCCAGAGCTGGGCCCGCCAGGCCTCCGACTTGTCCGCGCTACGCGCCTCCACGCGCCTCCCGATTTCGCAGAGCAAAGCGGCGGAGGTATCACTCTGGAATTGCCCTAAATGTAGAGTAGAGTACACCCAGTCTCAAATCCCAAAGATTTACCGGTGCTTCTGTGGAAAACTCGAGAATCCACCGAGTGATGACCCGTGGATTCTTCCTCATTCGTGCGGTGAGGTCTGTAATAGGCCTCTGAAGCACAATTGCGGCCACCATTGCTTGCTTCTGTGCCACCCGGGGCCCTGCCCGTCCTGCCCGAAGCTCGTGAAGGCTCGCTGCTTCTGTGGCTCTGTCCAGGACATGAGGCGGTGTGGGTTTAAGAATTTCTCATGTAACAATGCTTGTGAGAAGAAATTAGCGTGTGGGGTTCACCGCTGCTCGGAGATTTGCCACGAGGGGCCTTGCCCGCCGTGTCGGGTGAGGGGGAGATACAGGTGCCAATGTGGGAAGAGGGAGGAGGAGAAGGAGTGTTGTGAGAGGCTTGATTTTAGGTGTGAGGAGAATTGTGAGAGAATGCTGGGGTGTGGACAGCATATGTGTAGTAAAGGGTGTCATTCGGGGGAGTGTGGACCGTGCCCGTTTCAGGGGAAGAGAACATGTCCGTGTGGGAAGAGAGTGCATGAAGGATTGTCTTGCAAGGATGCAGTGCCGCTGTGTGGTGCAACTTGTGATAAGATGTTAAGCTGTGGCTACCATAGGTGCCCGGAGAGGTGTCATCGCGGGCAGTGCCTTGAGACTTGCAGAACAGTTGTCACTAAGAGGTGTCGCTGCGGGGGCTTGAAGAAGGAGGTTCCTTGTCATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAGATTAAGAGACTGCGGGCGGCATCCTTGTAAACGCCGCTGCTGTGATGGGGACTGCCCACCATGCTCAGAGATTTGTGGCAGAAAGCTTCGCTGTAAGAACCACAAATGCCCATCTCCCTGCCATAGAGGTGCTTGTGCTCCTTGCCCAGTGATGGTGACAATTGCATGTTTATGTGGTGCCACACACTTTGAGGTTCCTTGCGGCACTGAGATGGATCAGAAGCCTCCTCGATGTCGTAAGCCATGCCCTATTACTCCTTTATGCAGGCATGGACCAAATAGCAAGCCGCATAAATGCCATTATGGAGCTTGCCACCCATGTAAACTACTTTGTGAAGAAGAATACCCATGTGGCCACAACTGCAAACTAAGGTGCCATGGACCTAAACCTCCTCCAAATCCAGAATTTACATTGAAACCGAAGAAAAAGAAGTCTTTTCATCAGCCTGAGTGTACTCCTGGTTCTCCATGCCCTCCATGCCCAGAGTTTGTTTGGAGATCATGTGTGGGCCAGCACTTTGCAGCAGACAGAATGATGGTCTGTTCAGATAAATCACTATTTTCCTGCGATAACTTGTGTGGGAATCCTCTACCTTGTGGTAACCACTTTTGCACCAAAACTTGCCACCCGCTCAAGAATCAGTCTTTGCCATCAGGGCAGCAAGCTAGAAGTGAGCCTTGTGAAGTGTGTTATCTTCCTTGCGAAAAGGAGAGGGCGCCAGCATGTATACATCCTTGCCCCTTGTCATGTCATCCTGGAGACTGCCCTCCTTGCAAAGTGCTCGTTAAGCGATCATGTCACTGTGGTTCCATGGTCCATGTTTTTGAGTGCATATACTATAATAGTTTGTCTGAAAAGGAGCAAACCGCTGTTCGTTCTTGTAAGGGGCTCTGTCATAGAAAGTTGCCTTATTGTACACATCTGTGCCCAGAGACTTGTCATCCTGGTCAGTGCTCATCACCTGAGAAGTGCTCTAAAAAGGTTACTGTTCGTTGTGGATGCCAGACCTTGAAAAGGGAGTGGTTATGTCATGATGTGCAGGCAGCCTATCGCAATGCTGGTACTGATCCCAAAGATATACCTAAGAATCAATTTGGACTTGGACTCCTCCCTTGCGACTCTAATTGCAAAAGTAAACAAAAGGTTGTTGATTCAGAATTGCATTCTCGCAGACCTAAAGTTGTGGAGGTGAAGGAACCAGATACTGATAAGCCTGCACCAAAGAGGAAGAAAAGGCGTGAACGAGGACAAGAAGTGGCACAAATCTCGACACTGCAAAAAATTTTGGCCCACATGAAGCGATTTCTTCTTGTGGTCACCATTCTGGTGGCTTTAGCTGCAGTATCATATTATGGCTACAGGGGTCTCCTCTGGCTCTCAGATTGGATGAATGAAGTAGAAGAGAAAAGGCAAAGAAGACACCCCCGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-NF-X1

Protein Analysis

867

Amino Acids

96.85

Weight (kDa)

8.81

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-NF-X1	PF01422	233 - 251	1.9e-06	NF-X1 type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05660
fragaria_vesca	FvH4_7g24480
malus_domestica	MD00G1166700.v1.1 MD07G1222000.v1.1
prunus_persica	Prupe.2G250200_v2.0.a1
pyrus_communis	pycom07g20050
rosa_chinensis	RchiOBHm_Chr1g0370241
rosa_laevigata	RLG00000027066
rosa_multiflora	Rmu_co8251429.1_g000001 Rmu_co8258023.1_g000001 Rmu_sc0018500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286720 Rroxscaffold_4G00287290
rosa_rugosa	Rorug01G0354900 Rorug01G0355000 Rorug01G0355100
rosa_samantha	Rh1AG363700 Rh1BG326800 Rh1CG340100 Rh1DG357200
rosa_wichuraiana	Rw1G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	771, 1035, 1346, 1542, 1885
AccBSI	CCGCTC	2 cut(s)	220, 1801
AccI	GTMKAC	1 cut(s)	1897
AccII	CGCG	4 cut(s)	326, 333, 343, 1056
AccIII	TCCGGA	3 cut(s)	41, 47, 53
AcoI	YGGCCR	2 cut(s)	544, 1522
AcsI	RAATTY	4 cut(s)	116, 658, 1574, 2451
AcuI	CTGAAG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	1886
AdeI	CACNNNGTG	1 cut(s)	476
AfaI	GTAC	4 cut(s)	413, 1624, 2086, 2233
AfiI	CCNNNNNNNGG	9 cut(s)	79, 232, 298, 715, 919, 920, 992, 1321, 2184
AflIII	ACRYGT	1 cut(s)	932
AgeI	ACCGGT	1 cut(s)	441
AgsI	TTSAA	3 cut(s)	1117, 1585, 2182
AjiI	CACGTC	1 cut(s)	243
AjnI	CCWGG	6 cut(s)	213, 306, 630, 1627, 1924, 2113
AleI	CACNNNNGTG	1 cut(s)	2092
AluBI	AGCT	8 cut(s)	6, 297, 598, 1020, 1255, 1478, 1835, 2507
AluI	AGCT	8 cut(s)	6, 297, 598, 1020, 1255, 1478, 1835, 2507
Alw21I	GWGCWC	5 cut(s)	8, 1309, 1953, 2126, 2144
Alw26I	GTCTC	6 cut(s)	426, 1064, 1170, 1923, 2096, 2540
AlwNI	CAGNNNCTG	1 cut(s)	2375
Ama87I	CYCGRG	3 cut(s)	230, 461, 571
Aor13HI	TCCGGA	3 cut(s)	41, 47, 53
ApaI	GGGCCC	2 cut(s)	304, 579
ApeKI	GCWGC	8 cut(s)	612, 711, 1104, 1206, 1691, 1828, 2213, 2507
ApoI	RAATTY	4 cut(s)	116, 658, 1574, 2451
AsiGI	ACCGGT	1 cut(s)	441
AspLEI	GCGC	5 cut(s)	194, 328, 335, 345, 1888
AsuC2I	CCSGG	5 cut(s)	231, 232, 572, 573, 1040
AsuHPI	GGTGA	7 cut(s)	521, 698, 766, 1336, 2121, 2371, 2479
AvaI	CYCGRG	3 cut(s)	230, 461, 571
AvaII	GGWCC	7 cut(s)	82, 235, 246, 905, 1442, 1550, 1984
BaeGI	GKGCMC	5 cut(s)	304, 579, 914, 1040, 2099
BalI	TGGCCA	1 cut(s)	1524
BamHI	GGATCC	4 cut(s)	44, 50, 56, 222
BanI	GGYRCC	5 cut(s)	771, 1035, 1346, 1542, 1885
BanII	GRGCYC	4 cut(s)	8, 304, 579, 2061
BauI	CACGAG	2 cut(s)	599, 728
BbsI	GAAGAC	2 cut(s)	265, 2593
Bbv12I	GWGCWC	5 cut(s)	8, 1309, 1953, 2126, 2144
BbvI	GCAGC	8 cut(s)	599, 698, 1091, 1193, 1703, 1840, 2225, 2494
BccI	CCATC	6 cut(s)	1208, 1288, 1315, 1375, 1699, 1828
BceAI	ACGGC	1 cut(s)	730
BcgI	CGANNNNNNTGC	4 cut(s)	1933, 1967, 2418, 2452
BciT130I	CCWGG	6 cut(s)	215, 308, 632, 1629, 1926, 2115
BcnI	CCSGG	5 cut(s)	231, 232, 572, 573, 1040
BcoDI	GTCTC	6 cut(s)	426, 1064, 1170, 1923, 2096, 2540
BfaI	CTAG	1 cut(s)	1836
BfmI	CTRYAG	2 cut(s)	2508, 2527
BfoI	RGCGCY	2 cut(s)	195, 1889
BglI	GCCNNNNNGGC	2 cut(s)	308, 1825
Bme18I	GGWCC	7 cut(s)	82, 235, 246, 905, 1442, 1550, 1984
BmeT110I	CYCGRG	3 cut(s)	230, 461, 571
BmgBI	CACGTC	1 cut(s)	243
BmrI	ACTGGG	2 cut(s)	412, 1310
BmsI	GCATC	4 cut(s)	297, 967, 1198, 2159
BmuI	ACTGGG	2 cut(s)	412, 1310
BpiI	GAAGAC	2 cut(s)	265, 2593
BplI	GAGNNNNNCTC	2 cut(s)	2126, 2158
BpmI	CTGGAG	2 cut(s)	236, 1947
BpuEI	CTTGAG	2 cut(s)	1088, 1787
BpuMI	CCSGG	5 cut(s)	231, 232, 572, 573, 1040
BsaBI	GATNNNNATC	3 cut(s)	27, 49, 55
BsaHI	GRCGYC	1 cut(s)	1886
BsaI	GGTCTC	1 cut(s)	2540
BsaJI	CCNNGG	7 cut(s)	230, 231, 485, 571, 572, 1546, 1980
BsaWI	WCCGGW	4 cut(s)	41, 47, 53, 441
BsaXI	ACNNNNNCTCC	6 cut(s)	788, 818, 1657, 1687, 2259, 2289
Bsc4I	CCNNNNNNNGG	9 cut(s)	79, 232, 298, 715, 919, 920, 992, 1321, 2184
Bse118I	RCCGGY	2 cut(s)	64, 441
Bse1I	ACTGG	4 cut(s)	127, 163, 418, 1316
Bse3DI	GCAATG	2 cut(s)	550, 2230
Bse8I	GATNNNNATC	3 cut(s)	27, 49, 55
BseAI	TCCGGA	3 cut(s)	41, 47, 53
BseBI	CCWGG	6 cut(s)	215, 308, 632, 1629, 1926, 2115
BseDI	CCNNGG	7 cut(s)	230, 231, 485, 571, 572, 1546, 1980
BseGI	GGATG	9 cut(s)	179, 288, 982, 1189, 1900, 1921, 2110, 2174, 2562
BseJI	GATNNNNATC	3 cut(s)	27, 49, 55
BseLI	CCNNNNNNNGG	9 cut(s)	79, 232, 298, 715, 919, 920, 992, 1321, 2184
BseMI	GCAATG	2 cut(s)	550, 2230
BseMII	CTCAG	5 cut(s)	1248, 1368, 1608, 2124, 2562
BseNI	ACTGG	4 cut(s)	127, 163, 418, 1316
BseRI	GAGGAG	8 cut(s)	175, 806, 809, 848, 1386, 1551, 2267, 2528
BseSI	GKGCMC	5 cut(s)	304, 579, 914, 1040, 2099
BseXI	GCAGC	8 cut(s)	599, 698, 1091, 1193, 1703, 1840, 2225, 2494
BseYI	CCCAGC	2 cut(s)	297, 853
BsgI	GTGCAG	3 cut(s)	235, 2228, 2370
Bsh1236I	CGCG	4 cut(s)	326, 333, 343, 1056
BshNI	GGYRCC	5 cut(s)	771, 1035, 1346, 1542, 1885
BshTI	ACCGGT	1 cut(s)	441
BsiHKAI	GWGCWC	5 cut(s)	8, 1309, 1953, 2126, 2144
BsiHKCI	CYCGRG	3 cut(s)	230, 461, 571
BsiSI	CCGG	9 cut(s)	42, 48, 54, 65, 189, 231, 442, 572, 1040
BslFI	GGGAC	2 cut(s)	248, 1232
BslI	CCNNNNNNNGG	9 cut(s)	79, 232, 298, 715, 919, 920, 992, 1321, 2184
BsmAI	GTCTC	6 cut(s)	426, 1064, 1170, 1923, 2096, 2540
BsmFI	GGGAC	2 cut(s)	248, 1232
BsmI	GAATGC	2 cut(s)	855, 2332
Bso31I	GGTCTC	1 cut(s)	2540
BsoBI	CYCGRG	3 cut(s)	230, 461, 571
Bsp120I	GGGCCC	2 cut(s)	300, 575
Bsp13I	TCCGGA	3 cut(s)	41, 47, 53
Bsp1407I	TGTACA	1 cut(s)	2084
Bsp19I	CCATGG	2 cut(s)	1546, 1980
BspCNI	CTCAG	5 cut(s)	1247, 1369, 1609, 2125, 2561
BspEI	TCCGGA	3 cut(s)	41, 47, 53
BspFNI	CGCG	4 cut(s)	326, 333, 343, 1056
BspHI	TCATGA	1 cut(s)	2200
BspMAI	CTGCAG	1 cut(s)	2512
BspT107I	GGYRCC	5 cut(s)	771, 1035, 1346, 1542, 1885
BspTNI	GGTCTC	1 cut(s)	2540
BsrBI	CCGCTC	2 cut(s)	220, 1801
BsrDI	GCAATG	2 cut(s)	550, 2230
BsrFI	RCCGGY	2 cut(s)	64, 441
BsrGI	TGTACA	1 cut(s)	2084
BsrI	ACTGG	4 cut(s)	127, 163, 418, 1316
BssAI	RCCGGY	2 cut(s)	64, 441
BssECI	CCNNGG	7 cut(s)	230, 231, 485, 571, 572, 1546, 1980
BssNAI	GTATAC	1 cut(s)	1898
BssNI	GRCGYC	1 cut(s)	1886
BssSI	CACGAG	2 cut(s)	599, 728
BssT1I	CCWWGG	2 cut(s)	1546, 1980
Bst1107I	GTATAC	1 cut(s)	1898
Bst2BI	CACGAG	2 cut(s)	599, 728
Bst2UI	CCWGG	6 cut(s)	215, 308, 632, 1629, 1926, 2115
Bst4CI	ACNGT	4 cut(s)	909, 1084, 1973, 2158
Bst6I	CTCTTC	5 cut(s)	287, 779, 920, 941, 2565
BstACI	GRCGYC	1 cut(s)	1886
BstAUI	TGTACA	1 cut(s)	2084
BstDEI	CTNAG	9 cut(s)	112, 1092, 1234, 1377, 1538, 1617, 2133, 2253, 2548
BstDSI	CCRYGG	3 cut(s)	485, 1546, 1980
BstEII	GGTNACC	2 cut(s)	1769, 2485
BstENI	CCTNNNNNAGG	1 cut(s)	2182
BstF5I	GGATG	9 cut(s)	179, 288, 982, 1189, 1900, 1921, 2110, 2174, 2562
BstFNI	CGCG	4 cut(s)	326, 333, 343, 1056
BstH2I	RGCGCY	2 cut(s)	195, 1889
BstHHI	GCGC	5 cut(s)	194, 328, 335, 345, 1888
BstMAI	GTCTC	6 cut(s)	426, 1064, 1170, 1923, 2096, 2540
BstNI	CCWGG	6 cut(s)	215, 308, 632, 1629, 1926, 2115
BstNSI	RCATGY	4 cut(s)	936, 1152, 1338, 1896
BstPI	GGTNACC	2 cut(s)	1769, 2485
BstSFI	CTRYAG	2 cut(s)	2508, 2527
BstSLI	GKGCMC	5 cut(s)	304, 579, 914, 1040, 2099
BstUI	CGCG	4 cut(s)	326, 333, 343, 1056
BstV1I	GCAGC	8 cut(s)	599, 698, 1091, 1193, 1703, 1840, 2225, 2494
BstV2I	GAAGAC	2 cut(s)	265, 2593
BstX2I	RGATCY	5 cut(s)	44, 50, 56, 159, 222
BstXI	CCANNNNNNTGG	1 cut(s)	2497
BstYI	RGATCY	5 cut(s)	44, 50, 56, 159, 222
BstZ17I	GTATAC	1 cut(s)	1898
BtgI	CCRYGG	3 cut(s)	485, 1546, 1980
BtgZI	GCGATG	1 cut(s)	1037
BtrI	CACGTC	1 cut(s)	243
BtsCI	GGATG	9 cut(s)	179, 288, 982, 1189, 1900, 1921, 2110, 2174, 2562
BtsI	GCAGTG	3 cut(s)	987, 1067, 2441
BtsIMutI	CAGTG	8 cut(s)	120, 987, 1067, 1323, 1374, 1969, 2126, 2441
CaiI	CAGNNNCTG	1 cut(s)	2375
CciI	TCATGA	1 cut(s)	2200
CfoI	GCGC	5 cut(s)	194, 328, 335, 345, 1888
Cfr10I	RCCGGY	2 cut(s)	64, 441
Cfr9I	CCCGGG	2 cut(s)	230, 571
Csp6I	GTAC	4 cut(s)	412, 1623, 2085, 2232
CspAI	ACCGGT	1 cut(s)	441
CspCI	CAANNNNNGTGG	2 cut(s)	1339, 1374
CviQI	GTAC	4 cut(s)	412, 1623, 2085, 2232
DdeI	CTNAG	9 cut(s)	112, 1092, 1234, 1377, 1538, 1617, 2133, 2253, 2548
DinI	GGCGCC	1 cut(s)	1887
DraIII	CACNNNGTG	1 cut(s)	476
EaeI	YGGCCR	2 cut(s)	544, 1522
Eam1104I	CTCTTC	5 cut(s)	287, 779, 920, 941, 2565
EarI	CTCTTC	5 cut(s)	287, 779, 920, 941, 2565
EciI	GGCGGA	2 cut(s)	124, 386
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	1546, 1980
Eco147I	AGGCCT	2 cut(s)	311, 526
Eco24I	GRGCYC	4 cut(s)	8, 304, 579, 2061
Eco31I	GGTCTC	1 cut(s)	2540
Eco47I	GGWCC	7 cut(s)	82, 235, 246, 905, 1442, 1550, 1984
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	3 cut(s)	230, 461, 571
Eco91I	GGTNACC	2 cut(s)	1769, 2485
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	2182
EcoO109I	RGGNCCY	4 cut(s)	235, 575, 576, 734
EcoO65I	GGTNACC	2 cut(s)	1769, 2485
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	6 cut(s)	213, 306, 630, 1627, 1924, 2113
EcoT14I	CCWWGG	2 cut(s)	1546, 1980
EcoT38I	GRGCYC	4 cut(s)	8, 304, 579, 2061
EgeI	GGCGCC	1 cut(s)	1887
EheI	GGCGCC	1 cut(s)	1887
ErhI	CCWWGG	2 cut(s)	1546, 1980
FalI	AAGNNNNNCTT	2 cut(s)	1831, 1863
FaqI	GGGAC	2 cut(s)	248, 1232
FauI	CCCGC	7 cut(s)	77, 311, 750, 1049, 1100, 1175, 1806
FauNDI	CATATG	2 cut(s)	209, 870
FblI	GTMKAC	1 cut(s)	1897
FokI	GGATG	9 cut(s)	166, 275, 989, 1176, 1887, 1908, 2097, 2181, 2569
FriOI	GRGCYC	4 cut(s)	8, 304, 579, 2061
FspBI	CTAG	1 cut(s)	1836
GlaI	GCGC	5 cut(s)	193, 327, 334, 344, 1887
GsaI	CCCAGC	2 cut(s)	301, 857
GsuI	CTGGAG	2 cut(s)	236, 1947
HaeII	RGCGCY	2 cut(s)	195, 1889
HapII	CCGG	9 cut(s)	42, 48, 54, 65, 189, 231, 442, 572, 1040
HhaI	GCGC	5 cut(s)	194, 328, 335, 345, 1888
Hin1I	GRCGYC	1 cut(s)	1886
Hin6I	GCGC	5 cut(s)	192, 326, 333, 343, 1886
HinP1I	GCGC	5 cut(s)	192, 326, 333, 343, 1886
HindIII	AAGCTT	1 cut(s)	1253
HpaII	CCGG	9 cut(s)	42, 48, 54, 65, 189, 231, 442, 572, 1040
HphI	GGTGA	7 cut(s)	521, 698, 766, 1336, 2121, 2371, 2479
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	6 cut(s)	178, 598, 793, 953, 1114, 2356
HpyCH4III	ACNGT	4 cut(s)	909, 1084, 1973, 2158
HpyCH4IV	ACGT	1 cut(s)	242
HpyF3I	CTNAG	9 cut(s)	112, 1092, 1234, 1377, 1538, 1617, 2133, 2253, 2548
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	1886
HspAI	GCGC	5 cut(s)	192, 326, 333, 343, 1886
KasI	GGCGCC	1 cut(s)	1885
KflI	GGGWCCC	1 cut(s)	235
Kpn2I	TCCGGA	3 cut(s)	41, 47, 53
LmnI	GCTCC	4 cut(s)	217, 1312, 1475, 2029
Lsp1109I	GCAGC	8 cut(s)	599, 698, 1091, 1193, 1703, 1840, 2225, 2494
LweI	GCATC	4 cut(s)	297, 967, 1198, 2159
MaeI	CTAG	1 cut(s)	1836
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	7 cut(s)	668, 1087, 1324, 1769, 1967, 2152, 2485
MbiI	CCGCTC	2 cut(s)	220, 1801
MfeI	CAATTG	2 cut(s)	538, 1329
MflI	RGATCY	5 cut(s)	44, 50, 56, 159, 222
MlsI	TGGCCA	1 cut(s)	1524
MluNI	TGGCCA	1 cut(s)	1524
Mly113I	GGCGCC	1 cut(s)	1886
MlyI	GAGTC	4 cut(s)	5, 86, 2268, 2282
MmeI	TCCRAC	3 cut(s)	114, 250, 339
Mox20I	TGGCCA	1 cut(s)	1524
MroI	TCCGGA	3 cut(s)	41, 47, 53
MscI	TGGCCA	1 cut(s)	1524
MseI	TTAA	4 cut(s)	654, 1016, 1172, 1956
MslI	CAYNNNNRTG	6 cut(s)	937, 1296, 1339, 1379, 2092, 2495
Msp20I	TGGCCA	1 cut(s)	1524
MspA1I	CMGCKG	4 cut(s)	711, 988, 1206, 2039
MspI	CCGG	9 cut(s)	42, 48, 54, 65, 189, 231, 442, 572, 1040
MunI	CAATTG	2 cut(s)	538, 1329
Mva1269I	GAATGC	2 cut(s)	855, 2332
MvaI	CCWGG	6 cut(s)	215, 308, 632, 1629, 1926, 2115
MvnI	CGCG	4 cut(s)	326, 333, 343, 1056
NarI	GGCGCC	1 cut(s)	1886
NciI	CCSGG	5 cut(s)	231, 232, 572, 573, 1040
NcoI	CCATGG	2 cut(s)	1546, 1980
NdeI	CATATG	2 cut(s)	209, 870
NmuCI	GTSAC	4 cut(s)	1087, 1324, 1967, 2485
NspI	RCATGY	4 cut(s)	936, 1152, 1338, 1896
OliI	CACNNNNGTG	1 cut(s)	2092
PaeR7I	CTCGAG	1 cut(s)	461
PagI	TCATGA	1 cut(s)	2200
PceI	AGGCCT	2 cut(s)	311, 526
PciI	ACATGT	1 cut(s)	932
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PctI	GAATGC	2 cut(s)	855, 2332
PflFI	GACNNNGTC	1 cut(s)	244
PfoI	TCCNGGA	2 cut(s)	630, 1924
PinAI	ACCGGT	1 cut(s)	441
PleI	GAGTC	4 cut(s)	5, 86, 2268, 2282
PluTI	GGCGCC	1 cut(s)	1889
PpsI	GAGTC	4 cut(s)	5, 86, 2268, 2282
PpuMI	RGGWCCY	1 cut(s)	235
PscI	ACATGT	1 cut(s)	932
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	6 cut(s)	213, 306, 630, 1627, 1924, 2113
PspEI	GGTNACC	2 cut(s)	1769, 2485
PspFI	CCCAGC	2 cut(s)	297, 853
PspGI	CCWGG	6 cut(s)	213, 306, 630, 1627, 1924, 2113
PspOMI	GGGCCC	2 cut(s)	300, 575
PspPPI	RGGWCCY	1 cut(s)	235
PsrI	GAACNNNNNNTAC	2 cut(s)	1615, 1647
PstI	CTGCAG	1 cut(s)	2512
PstNI	CAGNNNCTG	1 cut(s)	2375
PsuI	RGATCY	5 cut(s)	44, 50, 56, 159, 222
PsyI	GACNNNGTC	1 cut(s)	244
RsaI	GTAC	4 cut(s)	413, 1624, 2086, 2233
RsaNI	GTAC	4 cut(s)	412, 1623, 2085, 2232
RseI	CAYNNNNRTG	6 cut(s)	937, 1296, 1339, 1379, 2092, 2495
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	4 cut(s)	654, 1016, 1172, 1956
SchI	GAGTC	4 cut(s)	5, 86, 2268, 2282
SfaNI	GCATC	4 cut(s)	297, 967, 1198, 2159
SfcI	CTRYAG	2 cut(s)	2508, 2527
SfiI	GGCCNNNNNGGCC	1 cut(s)	308
SfoI	GGCGCC	1 cut(s)	1887
Sfr274I	CTCGAG	1 cut(s)	461
SinI	GGWCC	7 cut(s)	82, 235, 246, 905, 1442, 1550, 1984
SlaI	CTCGAG	1 cut(s)	461
SmaI	CCCGGG	2 cut(s)	232, 573
SmiMI	CAYNNNNRTG	6 cut(s)	937, 1296, 1339, 1379, 2092, 2495
SmlI	CTYRAG	3 cut(s)	461, 1067, 1802
SmoI	CTYRAG	3 cut(s)	461, 1067, 1802
SseBI	AGGCCT	2 cut(s)	311, 526
SspDI	GGCGCC	1 cut(s)	1885
SspMI	CTAG	1 cut(s)	1836
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	2 cut(s)	311, 526
StyI	CCWWGG	2 cut(s)	1546, 1980
TaaI	ACNGT	4 cut(s)	909, 1084, 1973, 2158
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	462, 1399, 2438
TatI	WGTACW	3 cut(s)	411, 1622, 2084
TauI	GCSGC	8 cut(s)	75, 371, 546, 988, 1189, 1206, 1374, 1459
Tru1I	TTAA	4 cut(s)	654, 1016, 1172, 1956
Tru9I	TTAA	4 cut(s)	654, 1016, 1172, 1956
TscAI	CASTG	8 cut(s)	127, 987, 1067, 1323, 1381, 1976, 2126, 2448
TseFI	GTSAC	4 cut(s)	1087, 1324, 1967, 2485
TseI	GCWGC	8 cut(s)	612, 711, 1104, 1206, 1691, 1828, 2213, 2507
Tsp45I	GTSAC	4 cut(s)	1087, 1324, 1967, 2485
TspDTI	ATGAA	5 cut(s)	972, 1598, 2480, 2573, 2577
TspGWI	ACGGA	3 cut(s)	247, 259, 927
TspMI	CCCGGG	2 cut(s)	230, 571
TspRI	CASTG	8 cut(s)	127, 987, 1067, 1323, 1381, 1976, 2126, 2448
Tth111I	GACNNNGTC	1 cut(s)	244
VpaK11BI	GGWCC	7 cut(s)	82, 235, 246, 905, 1442, 1550, 1984
XagI	CCTNNNNNAGG	1 cut(s)	2182
XapI	RAATTY	4 cut(s)	116, 658, 1574, 2451
XceI	RCATGY	4 cut(s)	936, 1152, 1338, 1896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1659
XhoI	CTCGAG	1 cut(s)	461
XmaI	CCCGGG	2 cut(s)	230, 571
XmiI	GTMKAC	1 cut(s)	1897
XspI	CTAG	1 cut(s)	1836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.