Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8258023.1

Orthogroup ID

OG0010326

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 760

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8258023.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

cagagcaaagcggcggaggtatcactctggaattgccctaaatgtagagtagagtacacccagtctcaaatcccaaagatttaccggtgcttctgtggaaaactcgagaatccaccgagtgatgacccgtggattcttcctcattcgtgcggtgaggtctgtaataggcctctgaagcacaattgcggccaccattgcctgcttctgtgccacccggggccctgcccgtcctgcccgaagctcgtgaaggctcgctgcttctgtggctctgtccaggacatgaggcggtgtgggtttaagaatttctcatgtaacaatgcttgtgagaagaaattagcgtgtggtgttcaccgctgctcggagatttgccacgaggggccttgcccgccgtgtcgggtgagggggaggtacaggtgccaatgtgggaagagggaggaggagaaggagtgttgtgagaggcttgattttaggtgtgaggagaattgtgcccggagaggtgtcatcgcgggcagtgccttgagacttgcagaacagttgtcactaagaggtgtcgctgcgggggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-NF-X1

Protein Analysis

188

Amino Acids

21.03

Weight (kDa)

8.72

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05660
fragaria_vesca	FvH4_7g24480
malus_domestica	MD00G1166700.v1.1 MD07G1222000.v1.1
prunus_persica	Prupe.2G250200_v2.0.a1
pyrus_communis	pycom07g20050
rosa_chinensis	RchiOBHm_Chr1g0370241
rosa_laevigata	RLG00000027066
rosa_multiflora	Rmu_co8251429.1_g000001 Rmu_co8258023.1_g000001 Rmu_sc0018500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286720 Rroxscaffold_4G00287290
rosa_rugosa	Rorug01G0354900 Rorug01G0355000 Rorug01G0355100
rosa_samantha	Rh1AG363700 Rh1BG326800 Rh1CG340100 Rh1DG357200
rosa_wichuraiana	Rw1G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	414
AccII	CGCG	1 cut(s)	506
AciI	CCGC	9 cut(s)	11, 14, 150, 186, 286, 352, 386, 506, 557
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	2 cut(s)	56, 410
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	2 cut(s)	69, 514
Ama87I	CYCGRG	2 cut(s)	104, 214
AoxI	GGCC	4 cut(s)	167, 187, 218, 377
ApaI	GGGCCC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	255, 354, 554
ApoI	RAATTY	1 cut(s)	301
AsiGI	ACCGGT	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	218, 219, 377
AsuC2I	CCSGG	3 cut(s)	215, 216, 490
AsuHPI	GGTGA	3 cut(s)	164, 341, 409
AvaI	CYCGRG	2 cut(s)	104, 214
BaeGI	GKGCMC	2 cut(s)	222, 490
BanI	GGYRCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	2 cut(s)	242, 371
BbvI	GCAGC	3 cut(s)	242, 341, 541
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	275
BcnI	CCSGG	3 cut(s)	215, 216, 490
BcoDI	GTCTC	2 cut(s)	69, 514
BisI	GCNGC	5 cut(s)	12, 187, 256, 355, 555
BlsI	GCNGC	5 cut(s)	13, 188, 257, 356, 556
Bme1390I	CCNGG	4 cut(s)	215, 216, 275, 490
BmeT110I	CYCGRG	2 cut(s)	104, 214
BmgT120I	GGNCC	3 cut(s)	218, 219, 377
BmiI	GGNNCC	4 cut(s)	219, 220, 378, 416
BmrFI	CCNGG	4 cut(s)	215, 216, 275, 490
BmrI	ACTGGG	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	3 cut(s)	215, 216, 490
BsaJI	CCNNGG	3 cut(s)	128, 214, 215
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	128, 214, 215
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	3 cut(s)	449, 452, 491
BseSI	GKGCMC	2 cut(s)	222, 490
BseXI	GCAGC	3 cut(s)	242, 341, 541
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	4 cut(s)	169, 189, 220, 379
BshNI	GGYRCC	1 cut(s)	414
BshTI	ACCGGT	1 cut(s)	84
BsiHKCI	CYCGRG	2 cut(s)	104, 214
BsiSI	CCGG	3 cut(s)	85, 215, 490
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	69, 514
BsnI	GGCC	4 cut(s)	169, 189, 220, 379
BsoBI	CYCGRG	2 cut(s)	104, 214
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	222, 490
BspACI	CCGC	9 cut(s)	11, 14, 150, 186, 286, 352, 386, 506, 557
BspANI	GGCC	4 cut(s)	169, 189, 220, 379
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	4 cut(s)	219, 220, 378, 416
BspT107I	GGYRCC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	128, 214, 215
BssSI	CACGAG	2 cut(s)	242, 371
Bst2BI	CACGAG	2 cut(s)	242, 371
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	534
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	4 cut(s)	200, 253, 386, 508
BstDEI	CTNAG	1 cut(s)	542
BstDSI	CCRYGG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	506
BstMAI	GTCTC	2 cut(s)	69, 514
BstMWI	GCNNNNNNNGC	7 cut(s)	175, 195, 231, 264, 385, 512, 560
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	4 cut(s)	213, 214, 273, 488
BstSLI	GKGCMC	2 cut(s)	222, 490
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	242, 341, 541
BsuRI	GGCC	4 cut(s)	169, 189, 220, 379
BtgI	CCRYGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	4 cut(s)	200, 253, 386, 508
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	218, 219, 377
Cfr9I	CCCGGG	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	55, 409
CspAI	ACCGGT	1 cut(s)	84
CviAII	CATG	2 cut(s)	280, 309
CviJI	RGCY	9 cut(s)	169, 189, 220, 241, 251, 267, 379, 460, 563
CviKI_1	RGCY	9 cut(s)	169, 189, 220, 241, 251, 267, 379, 460, 563
CviQI	GTAC	2 cut(s)	55, 409
DdeI	CTNAG	1 cut(s)	542
DraIII	CACNNNGTG	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	29
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	2 cut(s)	104, 214
EcoO109I	RGGNCCY	3 cut(s)	218, 219, 377
EcoRII	CCWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	283, 312
FaiI	YATR	2 cut(s)	281, 310
FatI	CATG	2 cut(s)	279, 308
FauI	CCCGC	3 cut(s)	393, 499, 550
Fnu4HI	GCNGC	5 cut(s)	12, 187, 256, 355, 555
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	12, 187, 256, 355, 555
GluI	GCNGC	5 cut(s)	12, 187, 256, 355, 555
HaeIII	GGCC	4 cut(s)	169, 189, 220, 379
HapII	CCGG	3 cut(s)	85, 215, 490
Hin1II	CATG	2 cut(s)	283, 312
HinfI	GANTC	2 cut(s)	109, 133
HpaII	CCGG	3 cut(s)	85, 215, 490
HphI	GGTGA	3 cut(s)	164, 341, 409
Hpy166II	GTNNAC	2 cut(s)	57, 349
Hpy188I	TCNGA	2 cut(s)	174, 361
Hpy188III	TCNNGA	3 cut(s)	28, 106, 244
Hpy8I	GTNNAC	2 cut(s)	57, 349
HpyAV	CCTTC	2 cut(s)	241, 436
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	7 cut(s)	175, 195, 231, 264, 385, 512, 560
HpyF3I	CTNAG	1 cut(s)	542
Hsp92II	CATG	2 cut(s)	283, 312
Lsp1109I	GCAGC	3 cut(s)	242, 341, 541
MaeIII	GTNAC	2 cut(s)	311, 537
MboII	GAAGA	3 cut(s)	128, 340, 439
MfeI	CAATTG	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	222, 490
MluCI	AATT	5 cut(s)	31, 181, 301, 332, 481
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	3 cut(s)	85, 215, 490
MspR9I	CCNGG	4 cut(s)	215, 216, 275, 490
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	7 cut(s)	175, 195, 231, 264, 385, 512, 560
NciI	CCSGG	3 cut(s)	215, 216, 490
NlaIII	CATG	2 cut(s)	283, 312
NlaIV	GGNNCC	4 cut(s)	219, 220, 378, 416
NmuCI	GTSAC	1 cut(s)	537
PaeR7I	CTCGAG	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	109, 133
PfoI	TCCNGGA	1 cut(s)	273
PinAI	ACCGGT	1 cut(s)	84
PkrI	GCNGC	5 cut(s)	13, 188, 257, 356, 556
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	4 cut(s)	219, 220, 378, 416
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	3 cut(s)	218, 219, 377
RsaI	GTAC	2 cut(s)	56, 410
RsaNI	GTAC	2 cut(s)	55, 409
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	5 cut(s)	12, 187, 256, 355, 555
Sau96I	GGNCC	3 cut(s)	218, 219, 377
ScrFI	CCNGG	4 cut(s)	215, 216, 275, 490
SduI	GDGCHC	2 cut(s)	222, 490
SetI	ASST	8 cut(s)	21, 159, 243, 410, 416, 473, 499, 550
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmaI	CCCGGG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	104, 517
SmoI	CTYRAG	2 cut(s)	104, 517
Sse9I	AATT	5 cut(s)	31, 181, 301, 332, 481
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	9 cut(s)	11, 14, 150, 186, 286, 352, 386, 506, 557
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	4 cut(s)	213, 214, 273, 488
TaaI	ACNGT	1 cut(s)	534
TaqI	TCGA	1 cut(s)	105
TasI	AATT	5 cut(s)	31, 181, 301, 332, 481
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	2 cut(s)	14, 189
TfiI	GAWTC	2 cut(s)	109, 133
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	3 cut(s)	255, 354, 554
Tsp45I	GTSAC	1 cut(s)	537
TspMI	CCCGGG	1 cut(s)	214
TspRI	CASTG	1 cut(s)	517
XapI	RAATTY	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	104
XmaI	CCCGGG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.