Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0010326

Physical Location & Seq

Genomic Coordinates Forward (+)

45905256 .. 45914252

Gene Structure 8997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG326800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGAACTCGGATTCCGATTCCGATTCTGATCACAGCCAATCCGGATCCGGATCTGCACCCGCCCGCCGCCACTCGGACCTATCCGACTCTATTTTCCGATCCTACTTAGAATTCACCGGAAAAACCTCCGCCACCAACGCCGACCTCTCCAAGATCCAGTCCTTCCTGACGTCATCCTCCTCCGGCGCTCTGTCATGCCTGATATGCCTGGAGCGGATCCGACCCGGGGACCCGACGTGGTCCTGCACCTCCGTCTGCTTCTCCGTCTTTCACCTCTTCTGCATCCAGAGCTGGGCTCGCCAGGCCTCCGACTTGTCAGCGCTACGCGCCTCCACGCGCCTCCCTATTTCGCAGAGCAAAGCGGCGGAGGTATCACTCTGGAATTGCCCTAAATGTAGAGTAGAGTACACCCAGTCTCAAATCCCAAAGATTTACCGGTGCTTCTGTGGAAAACTCGAGAATCCACCGAGTGATGACCCGTGGATTCTTCCTCATTCGTGCGGTGAGGTCTGTAATAGGCCTCTGAAGCACAATTGCGGCCACCATTGCTTGCTTCTGTGCCACCCGGGGCCCTGCCCGTCCTGCCCGAAGCTCGTGAAGGCTCGCTGCTTCTGTGGCTCTGTCCAGGACATGAGGCGGTGTGGGTTTAAGAATTTCTCGTGTAACAATGCTTGTGAGAAGAAATTAGCGTGTGGTGTTCACCGCTGCTCGGAGATTTGCCACGAGGGGCCTTGCCCGCCGTGTCGGGTGAGGGGGAGGTATAGGTGCCAATGTGGGAAGAGGGAGGAGGAGAAGGAGTGTTGTGAGAGGCTTGATTTTAGGTGTGAGGAGAATTGTGAGAGAATGCTGGGGTGTGGGCAGCATAAGTGTAGTAAAGGGTGTCATTCAGGGGAGTGTGGACCGTGCCCATTTCAGGGGAAGAGGACATGTCCATGTGGGAAGAGAGTGCATGATGGATTGTCCTGCAAGGATGCAGTGCCGCTGTGTGGTGCAACTTGTGATAAGATGTTAAGTTGTGGCTACCATAGGTGCCCGGAGAGGTGTCATCGCGGGCAGTGCCTTGAGACTTGCAGAACAGTTGTCACTAAGAGGTGTCGCTGCGGGGGCTTGAAGAAGGAGGTTCCTTGTCATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAAATTAAGAGACTGTGGGCGGCATCCTTGTAAACGCCGCTGCTGTGATGGGGACTGCCCACCATGCTCAGAGATTTGTGGCAGAAAGCTTCGCTGTAAGAACCACAAATGCCCATCTCCCTGCCATAGAGGTGCTTGTGCTCCTTGCCCAGTGATGGTGACAATTGCATGTTTATGTGGTGCCACACACTTTGAGGTTCCTTGTGGCACTGAGATGGATCAGAAGCCTCCTCGATGTCGTAAGCCATGCCCTATTACTCCTTTATGCAGGCATGGACCAAATAGCAAGCCGCATAAATGCCATTATGGAGCTTGCCACCCATGTAAACTACTTTGTGAAGAAGAATACCCATGTGGCCACAAGTGCAAGCTAAGGTGCCATGGACCTAAACCTCCTCCAAATCCAGAATTTACATTGAAACCGAAGAAAAAGAAGTCTTTTCATCAGCCTGAGTGTACTCCTGGTTCTCCATGCCCTCCATGCCCAGAGCTTGTTTGGAGATCATGTGTGGGCCAGCACTTTGCAGCAGACAGAATGATGGTCTGTTCAGATAAATCACTATTTTCCTGCGATAACTTGTGTGGGAATCCTCTACCTTGTGGTAACCACTTTTGCACCAAAACTTGCCACCCGCTCAAGAATCAGTCTTTGCCATCAGGGCAGCAAGCTAGAAGTGAGCCTTGTGAAGTGTGTTATCTTCCGTGCGAAAAGGAGAGGGGGCCAGCATGTATACATCCTTGCCCCTTGTCATGTCATCCTGGAGACTGCCCTCCTTGCAAAGTGCTCGTTAAGCGATCATGTCACTGTGGTTCCATGGTCCATGTTTTTGAGTGCATATACTATAATAGTTTGTCTGAAAAGGAGCAAACCGCTGTTCGTTCTTGTAAGGGGCTCTGTCATAGAAAGTTGCCTTATTGTACACATCTGTGCCCAGAGACTTGTCATCCTGGTCAGTGCTCATCACCTGAGAAGTGCTCTAAAAAGGTTACTGTTCGTTGTGGATGCCAGACCTTGAAAAGGGAGTGGTTATGTCATGATGTGCAGGCAGCCTATCGCAATGCTGGTACTGATCCCAAAGATATACCTAAGAATCAATTTGGACTTGGACTCCTCCCTTGCGACTCTTATTGCAAAAGTAAACAAAAGGTTGTTGATTCAGAATTGCATTCTCGCAGACCCAAAGTTGTGGAGGTGAAGGAACCAGATACTGATAAGCCTGCACCAAAGAGGAAGAAAAGGCGTGAACGAGGACAAGAAGTGGCACAAATCTCGACACTGCAAAAAATTTTGGCCCACATGAAGCGATTTCTTCTTGTGGTCACCCTTCTGGTGGCTTTAGCTGCAGTATCATATTATGGCTACAGGGGTCTCCTCTGGCTCTCAGATTGGATGAATGAAGTAGAAGAGAAAAGGCAAAGAAGACACGCCCGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-NF-X1

Protein Analysis

865

Amino Acids

96.64

Weight (kDa)

8.85

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-NF-X1	PF01422	231 - 249	1.9e-06	NF-X1 type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05660
fragaria_vesca	FvH4_7g24480
malus_domestica	MD00G1166700.v1.1 MD07G1222000.v1.1
prunus_persica	Prupe.2G250200_v2.0.a1
pyrus_communis	pycom07g20050
rosa_chinensis	RchiOBHm_Chr1g0370241
rosa_laevigata	RLG00000027066
rosa_multiflora	Rmu_co8251429.1_g000001 Rmu_co8258023.1_g000001 Rmu_sc0018500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286720 Rroxscaffold_4G00287290
rosa_rugosa	Rorug01G0354900 Rorug01G0355000 Rorug01G0355100
rosa_samantha	Rh1AG363700 Rh1BG326800 Rh1CG340100 Rh1DG357200
rosa_wichuraiana	Rw1G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	173
AccB1I	GGYRCC	4 cut(s)	765, 1029, 1340, 1536
AccBSI	CCGCTC	2 cut(s)	214, 1795
AccI	GTMKAC	1 cut(s)	1891
AccII	CGCG	3 cut(s)	327, 337, 1050
AccIII	TCCGGA	2 cut(s)	41, 47
AclWI	GGATC	9 cut(s)	39, 52, 58, 93, 148, 211, 224, 1386, 2225
AcoI	YGGCCR	2 cut(s)	538, 1516
AcsI	RAATTY	4 cut(s)	110, 652, 1568, 2445
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	4 cut(s)	407, 1618, 2080, 2227
AfeI	AGCGCT	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	926
AgeI	ACCGGT	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	1111, 1579, 2176
AjiI	CACGTC	1 cut(s)	237
AjnI	CCWGG	6 cut(s)	207, 300, 624, 1621, 1918, 2107
AleI	CACNNNNGTG	1 cut(s)	2086
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	8 cut(s)	291, 592, 1249, 1472, 1531, 1651, 1829, 2501
AluI	AGCT	8 cut(s)	291, 592, 1249, 1472, 1531, 1651, 1829, 2501
Alw21I	GWGCWC	4 cut(s)	1303, 1947, 2120, 2138
Alw26I	GTCTC	6 cut(s)	420, 1058, 1164, 1917, 2090, 2534
AlwI	GGATC	9 cut(s)	39, 52, 58, 93, 148, 211, 224, 1386, 2225
AlwNI	CAGNNNCTG	1 cut(s)	2369
Ama87I	CYCGRG	3 cut(s)	224, 455, 565
Aor13HI	TCCGGA	2 cut(s)	41, 47
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	9 cut(s)	303, 518, 538, 569, 728, 1516, 1672, 1880, 2451
ApaI	GGGCCC	1 cut(s)	573
ApeKI	GCWGC	9 cut(s)	606, 705, 859, 1098, 1200, 1685, 1822, 2207, 2501
ApoI	RAATTY	4 cut(s)	110, 652, 1568, 2445
AsiGI	ACCGGT	1 cut(s)	435
AspLEI	GCGC	4 cut(s)	188, 322, 329, 339
AsuC2I	CCSGG	5 cut(s)	225, 226, 566, 567, 1034
AsuHPI	GGTGA	9 cut(s)	106, 263, 515, 692, 760, 1330, 2115, 2365, 2473
AvaI	CYCGRG	3 cut(s)	224, 455, 565
AvaII	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
BaeGI	GKGCMC	4 cut(s)	573, 908, 1034, 2093
BalI	TGGCCA	1 cut(s)	1518
BamHI	GGATCC	2 cut(s)	44, 216
BanI	GGYRCC	4 cut(s)	765, 1029, 1340, 1536
BanII	GRGCYC	3 cut(s)	298, 573, 2055
BauI	CACGAG	3 cut(s)	593, 658, 722
BbsI	GAAGAC	1 cut(s)	2587
Bbv12I	GWGCWC	4 cut(s)	1303, 1947, 2120, 2138
BbvI	GCAGC	9 cut(s)	593, 692, 871, 1085, 1187, 1697, 1834, 2219, 2488
BccI	CCATC	7 cut(s)	947, 1202, 1282, 1309, 1369, 1693, 1822
BceAI	ACGGC	1 cut(s)	724
BcgI	CGANNNNNNTGC	4 cut(s)	1927, 1961, 2412, 2446
BciT130I	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	5 cut(s)	225, 226, 566, 567, 1034
BcoDI	GTCTC	6 cut(s)	420, 1058, 1164, 1917, 2090, 2534
BfaI	CTAG	1 cut(s)	1830
BfmI	CTRYAG	2 cut(s)	2502, 2521
BfoI	RGCGCY	2 cut(s)	189, 323
BglI	GCCNNNNNGGC	1 cut(s)	1819
Bme18I	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
BmeT110I	CYCGRG	3 cut(s)	224, 455, 565
BmgBI	CACGTC	1 cut(s)	237
BmrI	ACTGGG	2 cut(s)	406, 1304
BmsI	GCATC	4 cut(s)	291, 961, 1192, 2153
BmuI	ACTGGG	2 cut(s)	406, 1304
BpiI	GAAGAC	1 cut(s)	2587
BplI	GAGNNNNNCTC	4 cut(s)	280, 312, 2120, 2152
BpmI	CTGGAG	2 cut(s)	230, 1941
Bpu10I	CCTNAGC	1 cut(s)	1532
BpuEI	CTTGAG	2 cut(s)	1082, 1781
BpuMI	CCSGG	5 cut(s)	225, 226, 566, 567, 1034
BsaBI	GATNNNNATC	2 cut(s)	27, 49
BsaHI	GRCGYC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	2534
BsaJI	CCNNGG	7 cut(s)	224, 225, 479, 565, 566, 1540, 1974
BsaWI	WCCGGW	4 cut(s)	41, 47, 116, 435
BsaXI	ACNNNNNCTCC	6 cut(s)	782, 812, 1651, 1681, 2253, 2283
Bse118I	RCCGGY	1 cut(s)	435
Bse1I	ACTGG	3 cut(s)	157, 412, 1310
Bse3DI	GCAATG	2 cut(s)	544, 2224
Bse8I	GATNNNNATC	2 cut(s)	27, 49
BseAI	TCCGGA	2 cut(s)	41, 47
BseBI	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
BseDI	CCNNGG	7 cut(s)	224, 225, 479, 565, 566, 1540, 1974
BseGI	GGATG	9 cut(s)	173, 282, 976, 1183, 1894, 1915, 2104, 2168, 2556
BseJI	GATNNNNATC	2 cut(s)	27, 49
BseMI	GCAATG	2 cut(s)	544, 2224
BseMII	CTCAG	5 cut(s)	1242, 1362, 1602, 2118, 2556
BseNI	ACTGG	3 cut(s)	157, 412, 1310
BseRI	GAGGAG	8 cut(s)	169, 800, 803, 842, 1380, 1545, 2261, 2522
BseSI	GKGCMC	4 cut(s)	573, 908, 1034, 2093
BseXI	GCAGC	9 cut(s)	593, 692, 871, 1085, 1187, 1697, 1834, 2219, 2488
BseYI	CCCAGC	2 cut(s)	291, 847
BsgI	GTGCAG	4 cut(s)	39, 229, 2222, 2364
Bsh1236I	CGCG	3 cut(s)	327, 337, 1050
BshFI	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
BshNI	GGYRCC	4 cut(s)	765, 1029, 1340, 1536
BshTI	ACCGGT	1 cut(s)	435
BsiHKAI	GWGCWC	4 cut(s)	1303, 1947, 2120, 2138
BsiHKCI	CYCGRG	3 cut(s)	224, 455, 565
BsiSI	CCGG	8 cut(s)	42, 48, 117, 183, 225, 436, 566, 1034
BslFI	GGGAC	2 cut(s)	242, 1226
BsmAI	GTCTC	6 cut(s)	420, 1058, 1164, 1917, 2090, 2534
BsmFI	GGGAC	2 cut(s)	242, 1226
BsmI	GAATGC	2 cut(s)	849, 2326
BsnI	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
Bso31I	GGTCTC	1 cut(s)	2534
BsoBI	CYCGRG	3 cut(s)	224, 455, 565
Bsp120I	GGGCCC	1 cut(s)	569
Bsp13I	TCCGGA	2 cut(s)	41, 47
Bsp1407I	TGTACA	1 cut(s)	2078
Bsp19I	CCATGG	2 cut(s)	1540, 1974
BspANI	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
BspCNI	CTCAG	5 cut(s)	1241, 1363, 1603, 2119, 2555
BspEI	TCCGGA	2 cut(s)	41, 47
BspFNI	CGCG	3 cut(s)	327, 337, 1050
BspHI	TCATGA	1 cut(s)	2194
BspMAI	CTGCAG	1 cut(s)	2506
BspPI	GGATC	9 cut(s)	39, 52, 58, 93, 148, 211, 224, 1386, 2225
BspT107I	GGYRCC	4 cut(s)	765, 1029, 1340, 1536
BspTNI	GGTCTC	1 cut(s)	2534
BsrBI	CCGCTC	2 cut(s)	214, 1795
BsrDI	GCAATG	2 cut(s)	544, 2224
BsrFI	RCCGGY	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	2078
BsrI	ACTGG	3 cut(s)	157, 412, 1310
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	7 cut(s)	224, 225, 479, 565, 566, 1540, 1974
BssNAI	GTATAC	1 cut(s)	1892
BssNI	GRCGYC	1 cut(s)	170
BssSI	CACGAG	3 cut(s)	593, 658, 722
BssT1I	CCWWGG	2 cut(s)	1540, 1974
Bst1107I	GTATAC	1 cut(s)	1892
Bst2BI	CACGAG	3 cut(s)	593, 658, 722
Bst2UI	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
Bst4CI	ACNGT	5 cut(s)	903, 1078, 1175, 1967, 2152
Bst6I	CTCTTC	5 cut(s)	281, 773, 914, 935, 2559
BstACI	GRCGYC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	2078
BstDEI	CTNAG	9 cut(s)	106, 1086, 1228, 1371, 1532, 1611, 2127, 2247, 2542
BstDSI	CCRYGG	3 cut(s)	479, 1540, 1974
BstEII	GGTNACC	2 cut(s)	1763, 2479
BstENI	CCTNNNNNAGG	1 cut(s)	2176
BstF5I	GGATG	9 cut(s)	173, 282, 976, 1183, 1894, 1915, 2104, 2168, 2556
BstFNI	CGCG	3 cut(s)	327, 337, 1050
BstH2I	RGCGCY	2 cut(s)	189, 323
BstHHI	GCGC	4 cut(s)	188, 322, 329, 339
BstMAI	GTCTC	6 cut(s)	420, 1058, 1164, 1917, 2090, 2534
BstNI	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
BstNSI	RCATGY	4 cut(s)	930, 1146, 1332, 1890
BstPI	GGTNACC	2 cut(s)	1763, 2479
BstSFI	CTRYAG	2 cut(s)	2502, 2521
BstSLI	GKGCMC	4 cut(s)	573, 908, 1034, 2093
BstUI	CGCG	3 cut(s)	327, 337, 1050
BstV1I	GCAGC	9 cut(s)	593, 692, 871, 1085, 1187, 1697, 1834, 2219, 2488
BstV2I	GAAGAC	1 cut(s)	2587
BstX2I	RGATCY	4 cut(s)	44, 50, 153, 216
BstXI	CCANNNNNNTGG	1 cut(s)	2347
BstYI	RGATCY	4 cut(s)	44, 50, 153, 216
BstZ17I	GTATAC	1 cut(s)	1892
BsuRI	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
BtgI	CCRYGG	3 cut(s)	479, 1540, 1974
BtgZI	GCGATG	1 cut(s)	1031
BtrI	CACGTC	1 cut(s)	237
BtsCI	GGATG	9 cut(s)	173, 282, 976, 1183, 1894, 1915, 2104, 2168, 2556
BtsI	GCAGTG	3 cut(s)	981, 1061, 2435
BtsIMutI	CAGTG	7 cut(s)	981, 1061, 1317, 1368, 1963, 2120, 2435
CaiI	CAGNNNCTG	1 cut(s)	2369
CciI	TCATGA	1 cut(s)	2194
CfoI	GCGC	4 cut(s)	188, 322, 329, 339
Cfr10I	RCCGGY	1 cut(s)	435
Cfr9I	CCCGGG	2 cut(s)	224, 565
Csp6I	GTAC	4 cut(s)	406, 1617, 2079, 2226
CspAI	ACCGGT	1 cut(s)	435
CspCI	CAANNNNNGTGG	2 cut(s)	1333, 1368
CviQI	GTAC	4 cut(s)	406, 1617, 2079, 2226
DdeI	CTNAG	9 cut(s)	106, 1086, 1228, 1371, 1532, 1611, 2127, 2247, 2542
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	2 cut(s)	538, 1516
Eam1104I	CTCTTC	5 cut(s)	281, 773, 914, 935, 2559
EarI	CTCTTC	5 cut(s)	281, 773, 914, 935, 2559
EciI	GGCGGA	2 cut(s)	118, 380
Eco130I	CCWWGG	2 cut(s)	1540, 1974
Eco147I	AGGCCT	2 cut(s)	305, 520
Eco24I	GRGCYC	3 cut(s)	298, 573, 2055
Eco31I	GGTCTC	1 cut(s)	2534
Eco47I	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
Eco47III	AGCGCT	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	3 cut(s)	224, 455, 565
Eco91I	GGTNACC	2 cut(s)	1763, 2479
EcoNI	CCTNNNNNAGG	1 cut(s)	2176
EcoO109I	RGGNCCY	4 cut(s)	229, 569, 570, 728
EcoO65I	GGTNACC	2 cut(s)	1763, 2479
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	6 cut(s)	207, 300, 624, 1621, 1918, 2107
EcoT14I	CCWWGG	2 cut(s)	1540, 1974
EcoT38I	GRGCYC	3 cut(s)	298, 573, 2055
ErhI	CCWWGG	2 cut(s)	1540, 1974
FalI	AAGNNNNNCTT	2 cut(s)	1825, 1857
FaqI	GGGAC	2 cut(s)	242, 1226
FauI	CCCGC	6 cut(s)	67, 71, 744, 1043, 1094, 1800
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	1891
FokI	GGATG	9 cut(s)	160, 269, 983, 1170, 1881, 1902, 2091, 2175, 2563
FriOI	GRGCYC	3 cut(s)	298, 573, 2055
FspBI	CTAG	1 cut(s)	1830
GlaI	GCGC	4 cut(s)	187, 321, 328, 338
GsaI	CCCAGC	2 cut(s)	295, 851
GsuI	CTGGAG	2 cut(s)	230, 1941
HaeII	RGCGCY	2 cut(s)	189, 323
HaeIII	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
HapII	CCGG	8 cut(s)	42, 48, 117, 183, 225, 436, 566, 1034
HhaI	GCGC	4 cut(s)	188, 322, 329, 339
Hin1I	GRCGYC	1 cut(s)	170
Hin6I	GCGC	4 cut(s)	186, 320, 327, 337
HinP1I	GCGC	4 cut(s)	186, 320, 327, 337
HindIII	AAGCTT	1 cut(s)	1247
HpaII	CCGG	8 cut(s)	42, 48, 117, 183, 225, 436, 566, 1034
HphI	GGTGA	9 cut(s)	106, 263, 515, 692, 760, 1330, 2115, 2365, 2473
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	6 cut(s)	172, 592, 787, 1108, 2350, 2495
HpyCH4III	ACNGT	5 cut(s)	903, 1078, 1175, 1967, 2152
HpyCH4IV	ACGT	2 cut(s)	170, 236
HpyF3I	CTNAG	9 cut(s)	106, 1086, 1228, 1371, 1532, 1611, 2127, 2247, 2542
HpySE526I	ACGT	2 cut(s)	170, 236
Hsp92I	GRCGYC	1 cut(s)	170
HspAI	GCGC	4 cut(s)	186, 320, 327, 337
KflI	GGGWCCC	1 cut(s)	229
Kpn2I	TCCGGA	2 cut(s)	41, 47
Ksp22I	TGATCA	1 cut(s)	28
LmnI	GCTCC	4 cut(s)	211, 1306, 1469, 2023
Lsp1109I	GCAGC	9 cut(s)	593, 692, 871, 1085, 1187, 1697, 1834, 2219, 2488
LweI	GCATC	4 cut(s)	291, 961, 1192, 2153
MaeI	CTAG	1 cut(s)	1830
MaeII	ACGT	2 cut(s)	170, 236
MaeIII	GTNAC	7 cut(s)	662, 1081, 1318, 1763, 1961, 2146, 2479
MbiI	CCGCTC	2 cut(s)	214, 1795
MfeI	CAATTG	2 cut(s)	532, 1323
MflI	RGATCY	4 cut(s)	44, 50, 153, 216
MlsI	TGGCCA	1 cut(s)	1518
MluNI	TGGCCA	1 cut(s)	1518
MlyI	GAGTC	3 cut(s)	80, 2262, 2276
MmeI	TCCRAC	3 cut(s)	108, 244, 333
Mox20I	TGGCCA	1 cut(s)	1518
MroI	TCCGGA	2 cut(s)	41, 47
MscI	TGGCCA	1 cut(s)	1518
MseI	TTAA	4 cut(s)	648, 1010, 1166, 1950
MslI	CAYNNNNRTG	5 cut(s)	931, 1290, 1333, 1373, 2086
Msp20I	TGGCCA	1 cut(s)	1518
MspA1I	CMGCKG	4 cut(s)	705, 982, 1200, 2033
MspI	CCGG	8 cut(s)	42, 48, 117, 183, 225, 436, 566, 1034
MunI	CAATTG	2 cut(s)	532, 1323
Mva1269I	GAATGC	2 cut(s)	849, 2326
MvaI	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
MvnI	CGCG	3 cut(s)	327, 337, 1050
NciI	CCSGG	5 cut(s)	225, 226, 566, 567, 1034
NcoI	CCATGG	2 cut(s)	1540, 1974
NmuCI	GTSAC	4 cut(s)	1081, 1318, 1961, 2479
NspI	RCATGY	4 cut(s)	930, 1146, 1332, 1890
OliI	CACNNNNGTG	1 cut(s)	2086
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	2194
PceI	AGGCCT	2 cut(s)	305, 520
PciI	ACATGT	1 cut(s)	926
PctI	GAATGC	2 cut(s)	849, 2326
PflFI	GACNNNGTC	1 cut(s)	238
PfoI	TCCNGGA	2 cut(s)	624, 1918
PinAI	ACCGGT	1 cut(s)	435
PleI	GAGTC	3 cut(s)	80, 2262, 2276
PpsI	GAGTC	3 cut(s)	80, 2262, 2276
PpuMI	RGGWCCY	1 cut(s)	229
PscI	ACATGT	1 cut(s)	926
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	6 cut(s)	207, 300, 624, 1621, 1918, 2107
PspEI	GGTNACC	2 cut(s)	1763, 2479
PspFI	CCCAGC	2 cut(s)	291, 847
PspGI	CCWGG	6 cut(s)	207, 300, 624, 1621, 1918, 2107
PspOMI	GGGCCC	1 cut(s)	569
PspPPI	RGGWCCY	1 cut(s)	229
PsrI	GAACNNNNNNTAC	2 cut(s)	1609, 1641
PstI	CTGCAG	1 cut(s)	2506
PstNI	CAGNNNCTG	1 cut(s)	2369
PsuI	RGATCY	4 cut(s)	44, 50, 153, 216
PsyI	GACNNNGTC	1 cut(s)	238
RsaI	GTAC	4 cut(s)	407, 1618, 2080, 2227
RsaNI	GTAC	4 cut(s)	406, 1617, 2079, 2226
RseI	CAYNNNNRTG	5 cut(s)	931, 1290, 1333, 1373, 2086
SaqAI	TTAA	4 cut(s)	648, 1010, 1166, 1950
SchI	GAGTC	3 cut(s)	80, 2262, 2276
SfaNI	GCATC	4 cut(s)	291, 961, 1192, 2153
SfcI	CTRYAG	2 cut(s)	2502, 2521
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
SlaI	CTCGAG	1 cut(s)	455
SmaI	CCCGGG	2 cut(s)	226, 567
SmiMI	CAYNNNNRTG	5 cut(s)	931, 1290, 1333, 1373, 2086
SmlI	CTYRAG	3 cut(s)	455, 1061, 1796
SmoI	CTYRAG	3 cut(s)	455, 1061, 1796
SseBI	AGGCCT	2 cut(s)	305, 520
SspMI	CTAG	1 cut(s)	1830
StuI	AGGCCT	2 cut(s)	305, 520
StyI	CCWWGG	2 cut(s)	1540, 1974
TaaI	ACNGT	5 cut(s)	903, 1078, 1175, 1967, 2152
TaiI	ACGT	2 cut(s)	173, 239
TaqI	TCGA	3 cut(s)	456, 1393, 2432
TatI	WGTACW	3 cut(s)	405, 1616, 2078
TauI	GCSGC	7 cut(s)	69, 365, 540, 982, 1183, 1200, 1453
Tru1I	TTAA	4 cut(s)	648, 1010, 1166, 1950
Tru9I	TTAA	4 cut(s)	648, 1010, 1166, 1950
TscAI	CASTG	7 cut(s)	981, 1061, 1317, 1375, 1970, 2120, 2442
TseFI	GTSAC	4 cut(s)	1081, 1318, 1961, 2479
TseI	GCWGC	9 cut(s)	606, 705, 859, 1098, 1200, 1685, 1822, 2207, 2501
Tsp45I	GTSAC	4 cut(s)	1081, 1318, 1961, 2479
TspDTI	ATGAA	5 cut(s)	17, 1592, 2474, 2567, 2571
TspGWI	ACGGA	3 cut(s)	241, 253, 1851
TspMI	CCCGGG	2 cut(s)	224, 565
TspRI	CASTG	7 cut(s)	981, 1061, 1317, 1375, 1970, 2120, 2442
Tth111I	GACNNNGTC	1 cut(s)	238
VpaK11BI	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
XagI	CCTNNNNNAGG	1 cut(s)	2176
XapI	RAATTY	4 cut(s)	110, 652, 1568, 2445
XceI	RCATGY	4 cut(s)	930, 1146, 1332, 1890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1653
XhoI	CTCGAG	1 cut(s)	455
XmaI	CCCGGG	2 cut(s)	224, 565
XmiI	GTMKAC	1 cut(s)	1891
XspI	CTAG	1 cut(s)	1830
ZraI	GACGTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.