Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8251429.1

Orthogroup ID

OG0010326

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 766

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8251429.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 440 bp

ataaatcactattttcctgcgataacttgtgtgggaatcctctaccttgtggtaaccacttttgcaccaaaacttgccaccctctcaagaatcagtctttgccatcagggcagcaagctagaagtgagccttgtgaagtgtgttatcttccttgcgaaaaggagagggcgccagcatgtatacatccttgccccttgtcatgtcatcctggagactgccctccttgcaaagtgctcgttaagcgatcatgtcactgtggttccatggtccatgtttttgagtgcatatactataatagtttgtctgaaaaggagcaaaccgctgttcgttcttgtaaggggctctgtcatagaaagttgccttattgtacacatctgtgcccagagacttgtcatcctggtcagtgctcatcacctgagaagtgctctaaaaaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-NF-X1

Protein Analysis

145

Amino Acids

16.01

Weight (kDa)

8.41

Isoelectric Point (pI)

76.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05660
fragaria_vesca	FvH4_7g24480
malus_domestica	MD00G1166700.v1.1 MD07G1222000.v1.1
prunus_persica	Prupe.2G250200_v2.0.a1
pyrus_communis	pycom07g20050
rosa_chinensis	RchiOBHm_Chr1g0370241
rosa_laevigata	RLG00000027066
rosa_multiflora	Rmu_co8251429.1_g000001 Rmu_co8258023.1_g000001 Rmu_sc0018500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286720 Rroxscaffold_4G00287290
rosa_rugosa	Rorug01G0354900 Rorug01G0355000 Rorug01G0355100
rosa_samantha	Rh1AG363700 Rh1BG326800 Rh1CG340100 Rh1DG357200
rosa_wichuraiana	Rw1G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	169
AfaI	GTAC	1 cut(s)	369
AjnI	CCWGG	2 cut(s)	207, 396
AleI	CACNNNNGTG	1 cut(s)	375
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	3 cut(s)	236, 409, 427
Alw26I	GTCTC	2 cut(s)	206, 379
ApeKI	GCWGC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	3 cut(s)	236, 409, 427
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciT130I	CCWGG	2 cut(s)	209, 398
BcoDI	GTCTC	2 cut(s)	206, 379
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	172
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	209, 398
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	2 cut(s)	170, 261
BmrFI	CCNGG	2 cut(s)	209, 398
BplI	GAGNNNNNCTC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	263
BseBI	CCWGG	2 cut(s)	209, 398
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	3 cut(s)	183, 204, 393
BseMII	CTCAG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	3 cut(s)	236, 409, 427
BsmAI	GTCTC	2 cut(s)	206, 379
Bsp1286I	GDGCHC	5 cut(s)	236, 344, 382, 409, 427
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	1 cut(s)	320
BspCNI	CTCAG	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	170, 261
BspT107I	GGYRCC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	1 cut(s)	244
BssNAI	GTATAC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	263
Bst1107I	GTATAC	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	209, 398
Bst4CI	ACNGT	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	169
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	116, 173
BstDEI	CTNAG	1 cut(s)	416
BstDSI	CCRYGG	1 cut(s)	263
BstEII	GGTNACC	1 cut(s)	52
BstF5I	GGATG	3 cut(s)	183, 204, 393
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	206, 379
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 224, 240
BstNI	CCWGG	2 cut(s)	209, 398
BstNSI	RCATGY	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	207, 396
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	123
BstZ17I	GTATAC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	3 cut(s)	183, 204, 393
BtsIMutI	CAGTG	2 cut(s)	252, 409
Cac8I	GCNNGC	2 cut(s)	116, 173
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	5 cut(s)	176, 200, 248, 264, 271
CviJI	RGCY	3 cut(s)	118, 129, 342
CviKI_1	RGCY	3 cut(s)	118, 129, 342
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	416
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	52
EcoO65I	GGTNACC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	207, 396
EcoT14I	CCWWGG	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	344
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	5 cut(s)	179, 203, 251, 267, 274
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	5 cut(s)	175, 199, 247, 263, 270
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	3 cut(s)	170, 191, 380
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	172
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	5 cut(s)	179, 203, 251, 267, 274
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	36, 90
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	2 cut(s)	181, 370
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	2 cut(s)	181, 370
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	65, 227, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 224, 240
HpyF3I	CTNAG	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	5 cut(s)	179, 203, 251, 267, 274
HspAI	GCGC	1 cut(s)	169
KasI	GGCGCC	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	9 cut(s)	30, 92, 185, 194, 221, 383, 395, 410, 428
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	52, 250
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	139
MhlI	GDGCHC	5 cut(s)	236, 344, 382, 409, 427
Mly113I	GGCGCC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	50, 92, 158, 230
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	209, 398
MvaI	CCWGG	2 cut(s)	209, 398
MwoI	GCNNNNNNNGC	3 cut(s)	108, 224, 240
NarI	GGCGCC	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	5 cut(s)	179, 203, 251, 267, 274
NlaIV	GGNNCC	2 cut(s)	170, 261
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	179
OliI	CACNNNNGTG	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	36, 90
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	113
PluTI	GGCGCC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	207, 396
PspEI	GGTNACC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	207, 396
PspN4I	GGNNCC	2 cut(s)	170, 261
PspPI	GGNCC	1 cut(s)	267
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	209, 398
SduI	GDGCHC	5 cut(s)	236, 344, 382, 409, 427
SetI	ASST	4 cut(s)	48, 120, 417, 437
SfoI	GGCGCC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SsiI	CCGC	1 cut(s)	320
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	207, 396
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	256
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	36, 90
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	259, 409
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	2 cut(s)	259, 409
VpaK11BI	GGWCC	1 cut(s)	267
XceI	RCATGY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.