Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010326

Physical Location & Seq

Genomic Coordinates Forward (+)

61405107 .. 61413748

Gene Structure 8642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGAACTCGGATTCCGATTCCGATTCTGATCACAGCCAATCCGGATCCGGATCTGCACCCGCCCGCCGCCACTCGGACCTATCCGACTCTATTTTCCGATCCTACTTAGAATTCACCGGAAAAACCTCCGCCACCAACGCCGACCTCTCCAAGATCCAGTCCTTCCTGACGTCATCCTCCTCCGGCGCTCTGTCATGCCTGATATGCCTGGAGCGGATCCGACCCGGGGACCCGACGTGGTCCTGCACCTCCGTCTGCTTCTCCGTCTTTCACCTCTTCTGCATCCAGAGCTGGGCTCGCCAGGCCTCCGACTTGTCAGCGCTACGCGCCTCCACGCGCCTCCCTATTTCGCAGAGCAAAGCGGCGGAGGTATCACTCTGGAATTGCCCTAAATGTAGAGTAGAGTACACCCAGTCTCAAATCCCAAAGATTTACCGGTGCTTCTGTGGAAAACTCGAGAATCCACCGAGTGATGACCCGTGGATTCTTCCTCATTCGTGCGGTGAGGTCTGTAATAGGCCTCTGAAGCACAATTGCGGCCACCATTGCTTGCTTCTGTGCCACCCGGGGCCCTGCCCGTCCTGCCCGAAGCTCGTGAAGGCTCGCTGCTTCTGTGGCTCTGTCCAGGACATGAGGCGGTGTGGGTTTAAGAATTTCTCGTGTAACAATGCTTGTGAGAAGAAATTAGCGTGTGGTGTTCACCGCTGCTCGGAGATTTGCCACGAGGGGCCTTGCCCGCCGTGTCGGGTGAGGGGGAGGTATAGGTGCCAATGTGGGAAGAGGGAGGAGGAGAAGGAGTGTTGTGAGAGGCTTGATTTTAGGTGTGAGGAGAATTGTGAGAGAATGCTGGGGTGTGGGCAGCATAAGTGTAGTAAAGGGTGTCATTCAGGGGAGTGTGGACCGTGCCCATTTCAGGGGAAGAGGACATGTCCATGTGGGAAGAGAGTGCATGATGGATTGTCCTGCAAGGATGCAGTGCCGCTGTGTGGTGCAACTTGTGATAAGATGTTAAGTTGTGGCTACCATAGGTGCCCGGAGAGGTGTCATCGCGGGCAGTGCCTTGAGACTTGCAGAACAGTTGTCACTAAGAGGTGTCGCTGCGGGGGCTTGAAGAAGGAGGTTCCTTGTCATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAAATTAAGAGACTGTGGGCGGCATCCTTGTAAACGCCGCTGCTGTGATGGGGACTGCCCACCATGCTCAGAGATTTGTGGCAGAAAGCTTCGCTGTAAGAACCACAAATGCCCATCTCCCTGCCATAGAGGTGCTTGTGCTCCTTGCCCAGTGATGGTGACAATTGCATGTTTATGTGGTGCCACACACTTTGAGGTTCCTTGTGGCACTGAGATGGATCAGAAGCCTCCTCGATGTCGTAAGCCATGCCCTATTACTCCTTTATGCAGGCATGGACCAAATAGCAAGCCGCATAAATGCCATTATGGAGCTTGCCACCCATGTAAACTACTTTGTGAAGAAGAATACCCATGTGGCCACAAGTGCAAGCTAAGGTGCCATGGACCTAAACCTCCTCCAAATCCAGAATTTACATTGAAACCGAAGAAAAAGAAGTCTTTTCATCAGCCTGAGTGTACTCCTGGTTCTCCATGCCCTCCATGCCCAGAGCTTGTTTGGAGATCATGTGTGGGCCAGCACTTTGCAGCAGACAGAATGATGGTCTGTTCAGATAAATCACTATTTTCCTGCGATAACTTGTGTGGGAATCCTCTACCTTGTGGTAACCACTTTTGCACCAAAACTTGCCACCCGCTCAAGAATCAGTCTTTGCCATCAGGGCAGCAAGCTAGAAGTGAGCCTTGTGAAGTGTGTTATCTTCCGTGCGAAAAGGAGAGGGGGCCAGCATGTATACATCCTTGCCCCTTGTCATGTCATCCTGGAGACTGCCCTCCTTGCAAAGTGCTCGTTAAGCGATCATGTCACTGTGGTTCCATGGTCCATGTTTTTGAGTGCATATACTATAATAGTTTGTCTGAAAAGGAGCAAACCGCTGTTCGTTCTTGTAAGGGGCTCTGTCATAGAAAGTTGCCTTATTGTACACATCTGTGCCCAGAGACTTGTCATCCTGGTCAGTGCTCATCACCTGAGAAGTGCTCTAAAAAGGTTACTGTTCGTTGTGGATGCCAGACCTTGAAAAGGGAGTGGTTATGTCATGATGTGCAGGCAGCCTATCGCAATGCTGGTACTGATCCCAAAGATATACCTAAGAATCAATTTGGACTTGGACTCCTCCCTTGCGACTCTTATTGCAAAAGTAAACAAAAGGTTGTTGATTCAGAATTGCATTCTCGCAGACCCAAAGTTGTGGAGGTGAAGGAACCAGATACTGATAAGCCTGCACCAAAGAGGAAGAAAAGGCGTGAACGAGGACAAGAAGTGGCACAAATCTCGACACTGCAAAAAATTTTGGCCCACATGAAGCGATTTCTTCTTGTGGTCACCCTTCTGGTGGCTTTAGCTGCAGTATCATATTATGGCTACAGGGGTCTCCTCTGGCTCTCAGATTGGATGAATGAAGTAGAAGAGAAAAGGCAAAGAAGACACGCCCGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-NF-X1

Protein Analysis

865

Amino Acids

96.64

Weight (kDa)

8.85

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-NF-X1	PF01422	231 - 249	1.9e-06	NF-X1 type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05660
fragaria_vesca	FvH4_7g24480
malus_domestica	MD00G1166700.v1.1 MD07G1222000.v1.1
prunus_persica	Prupe.2G250200_v2.0.a1
pyrus_communis	pycom07g20050
rosa_chinensis	RchiOBHm_Chr1g0370241
rosa_laevigata	RLG00000027066
rosa_multiflora	Rmu_co8251429.1_g000001 Rmu_co8258023.1_g000001 Rmu_sc0018500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286720 Rroxscaffold_4G00287290
rosa_rugosa	Rorug01G0354900 Rorug01G0355000 Rorug01G0355100
rosa_samantha	Rh1AG363700 Rh1BG326800 Rh1CG340100 Rh1DG357200
rosa_wichuraiana	Rw1G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	173
AccB1I	GGYRCC	4 cut(s)	765, 1029, 1340, 1536
AccBSI	CCGCTC	2 cut(s)	214, 1795
AccI	GTMKAC	1 cut(s)	1891
AccII	CGCG	3 cut(s)	327, 337, 1050
AccIII	TCCGGA	2 cut(s)	41, 47
AclWI	GGATC	9 cut(s)	39, 52, 58, 93, 148, 211, 224, 1386, 2225
AcoI	YGGCCR	2 cut(s)	538, 1516
AcsI	RAATTY	4 cut(s)	110, 652, 1568, 2445
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	4 cut(s)	407, 1618, 2080, 2227
AfeI	AGCGCT	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	926
AgeI	ACCGGT	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	1111, 1579, 2176
AjiI	CACGTC	1 cut(s)	237
AjnI	CCWGG	6 cut(s)	207, 300, 624, 1621, 1918, 2107
AleI	CACNNNNGTG	1 cut(s)	2086
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	8 cut(s)	291, 592, 1249, 1472, 1531, 1651, 1829, 2501
AluI	AGCT	8 cut(s)	291, 592, 1249, 1472, 1531, 1651, 1829, 2501
Alw21I	GWGCWC	4 cut(s)	1303, 1947, 2120, 2138
Alw26I	GTCTC	6 cut(s)	420, 1058, 1164, 1917, 2090, 2534
AlwI	GGATC	9 cut(s)	39, 52, 58, 93, 148, 211, 224, 1386, 2225
AlwNI	CAGNNNCTG	1 cut(s)	2369
Ama87I	CYCGRG	3 cut(s)	224, 455, 565
Aor13HI	TCCGGA	2 cut(s)	41, 47
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	9 cut(s)	303, 518, 538, 569, 728, 1516, 1672, 1880, 2451
ApaI	GGGCCC	1 cut(s)	573
ApeKI	GCWGC	9 cut(s)	606, 705, 859, 1098, 1200, 1685, 1822, 2207, 2501
ApoI	RAATTY	4 cut(s)	110, 652, 1568, 2445
AsiGI	ACCGGT	1 cut(s)	435
AspLEI	GCGC	4 cut(s)	188, 322, 329, 339
AsuC2I	CCSGG	5 cut(s)	225, 226, 566, 567, 1034
AsuHPI	GGTGA	9 cut(s)	106, 263, 515, 692, 760, 1330, 2115, 2365, 2473
AvaI	CYCGRG	3 cut(s)	224, 455, 565
AvaII	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
BaeGI	GKGCMC	4 cut(s)	573, 908, 1034, 2093
BalI	TGGCCA	1 cut(s)	1518
BamHI	GGATCC	2 cut(s)	44, 216
BanI	GGYRCC	4 cut(s)	765, 1029, 1340, 1536
BanII	GRGCYC	3 cut(s)	298, 573, 2055
BauI	CACGAG	3 cut(s)	593, 658, 722
BbsI	GAAGAC	1 cut(s)	2587
Bbv12I	GWGCWC	4 cut(s)	1303, 1947, 2120, 2138
BbvI	GCAGC	9 cut(s)	593, 692, 871, 1085, 1187, 1697, 1834, 2219, 2488
BccI	CCATC	7 cut(s)	947, 1202, 1282, 1309, 1369, 1693, 1822
BceAI	ACGGC	1 cut(s)	724
BcgI	CGANNNNNNTGC	4 cut(s)	1927, 1961, 2412, 2446
BciT130I	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	5 cut(s)	225, 226, 566, 567, 1034
BcoDI	GTCTC	6 cut(s)	420, 1058, 1164, 1917, 2090, 2534
BfaI	CTAG	1 cut(s)	1830
BfmI	CTRYAG	2 cut(s)	2502, 2521
BfoI	RGCGCY	2 cut(s)	189, 323
BglI	GCCNNNNNGGC	1 cut(s)	1819
Bme18I	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
BmeT110I	CYCGRG	3 cut(s)	224, 455, 565
BmgBI	CACGTC	1 cut(s)	237
BmrI	ACTGGG	2 cut(s)	406, 1304
BmsI	GCATC	4 cut(s)	291, 961, 1192, 2153
BmuI	ACTGGG	2 cut(s)	406, 1304
BpiI	GAAGAC	1 cut(s)	2587
BplI	GAGNNNNNCTC	4 cut(s)	280, 312, 2120, 2152
BpmI	CTGGAG	2 cut(s)	230, 1941
Bpu10I	CCTNAGC	1 cut(s)	1532
BpuEI	CTTGAG	2 cut(s)	1082, 1781
BpuMI	CCSGG	5 cut(s)	225, 226, 566, 567, 1034
BsaBI	GATNNNNATC	2 cut(s)	27, 49
BsaHI	GRCGYC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	2534
BsaJI	CCNNGG	7 cut(s)	224, 225, 479, 565, 566, 1540, 1974
BsaWI	WCCGGW	4 cut(s)	41, 47, 116, 435
BsaXI	ACNNNNNCTCC	6 cut(s)	782, 812, 1651, 1681, 2253, 2283
Bse118I	RCCGGY	1 cut(s)	435
Bse1I	ACTGG	3 cut(s)	157, 412, 1310
Bse3DI	GCAATG	2 cut(s)	544, 2224
Bse8I	GATNNNNATC	2 cut(s)	27, 49
BseAI	TCCGGA	2 cut(s)	41, 47
BseBI	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
BseDI	CCNNGG	7 cut(s)	224, 225, 479, 565, 566, 1540, 1974
BseGI	GGATG	9 cut(s)	173, 282, 976, 1183, 1894, 1915, 2104, 2168, 2556
BseJI	GATNNNNATC	2 cut(s)	27, 49
BseMI	GCAATG	2 cut(s)	544, 2224
BseMII	CTCAG	5 cut(s)	1242, 1362, 1602, 2118, 2556
BseNI	ACTGG	3 cut(s)	157, 412, 1310
BseRI	GAGGAG	8 cut(s)	169, 800, 803, 842, 1380, 1545, 2261, 2522
BseSI	GKGCMC	4 cut(s)	573, 908, 1034, 2093
BseXI	GCAGC	9 cut(s)	593, 692, 871, 1085, 1187, 1697, 1834, 2219, 2488
BseYI	CCCAGC	2 cut(s)	291, 847
BsgI	GTGCAG	4 cut(s)	39, 229, 2222, 2364
Bsh1236I	CGCG	3 cut(s)	327, 337, 1050
BshFI	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
BshNI	GGYRCC	4 cut(s)	765, 1029, 1340, 1536
BshTI	ACCGGT	1 cut(s)	435
BsiHKAI	GWGCWC	4 cut(s)	1303, 1947, 2120, 2138
BsiHKCI	CYCGRG	3 cut(s)	224, 455, 565
BsiSI	CCGG	8 cut(s)	42, 48, 117, 183, 225, 436, 566, 1034
BslFI	GGGAC	2 cut(s)	242, 1226
BsmAI	GTCTC	6 cut(s)	420, 1058, 1164, 1917, 2090, 2534
BsmFI	GGGAC	2 cut(s)	242, 1226
BsmI	GAATGC	2 cut(s)	849, 2326
BsnI	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
Bso31I	GGTCTC	1 cut(s)	2534
BsoBI	CYCGRG	3 cut(s)	224, 455, 565
Bsp120I	GGGCCC	1 cut(s)	569
Bsp13I	TCCGGA	2 cut(s)	41, 47
Bsp1407I	TGTACA	1 cut(s)	2078
Bsp19I	CCATGG	2 cut(s)	1540, 1974
BspANI	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
BspCNI	CTCAG	5 cut(s)	1241, 1363, 1603, 2119, 2555
BspEI	TCCGGA	2 cut(s)	41, 47
BspFNI	CGCG	3 cut(s)	327, 337, 1050
BspHI	TCATGA	1 cut(s)	2194
BspMAI	CTGCAG	1 cut(s)	2506
BspPI	GGATC	9 cut(s)	39, 52, 58, 93, 148, 211, 224, 1386, 2225
BspT107I	GGYRCC	4 cut(s)	765, 1029, 1340, 1536
BspTNI	GGTCTC	1 cut(s)	2534
BsrBI	CCGCTC	2 cut(s)	214, 1795
BsrDI	GCAATG	2 cut(s)	544, 2224
BsrFI	RCCGGY	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	2078
BsrI	ACTGG	3 cut(s)	157, 412, 1310
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	7 cut(s)	224, 225, 479, 565, 566, 1540, 1974
BssNAI	GTATAC	1 cut(s)	1892
BssNI	GRCGYC	1 cut(s)	170
BssSI	CACGAG	3 cut(s)	593, 658, 722
BssT1I	CCWWGG	2 cut(s)	1540, 1974
Bst1107I	GTATAC	1 cut(s)	1892
Bst2BI	CACGAG	3 cut(s)	593, 658, 722
Bst2UI	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
Bst4CI	ACNGT	5 cut(s)	903, 1078, 1175, 1967, 2152
Bst6I	CTCTTC	5 cut(s)	281, 773, 914, 935, 2559
BstACI	GRCGYC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	2078
BstDEI	CTNAG	9 cut(s)	106, 1086, 1228, 1371, 1532, 1611, 2127, 2247, 2542
BstDSI	CCRYGG	3 cut(s)	479, 1540, 1974
BstEII	GGTNACC	2 cut(s)	1763, 2479
BstENI	CCTNNNNNAGG	1 cut(s)	2176
BstF5I	GGATG	9 cut(s)	173, 282, 976, 1183, 1894, 1915, 2104, 2168, 2556
BstFNI	CGCG	3 cut(s)	327, 337, 1050
BstH2I	RGCGCY	2 cut(s)	189, 323
BstHHI	GCGC	4 cut(s)	188, 322, 329, 339
BstMAI	GTCTC	6 cut(s)	420, 1058, 1164, 1917, 2090, 2534
BstNI	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
BstNSI	RCATGY	4 cut(s)	930, 1146, 1332, 1890
BstPI	GGTNACC	2 cut(s)	1763, 2479
BstSFI	CTRYAG	2 cut(s)	2502, 2521
BstSLI	GKGCMC	4 cut(s)	573, 908, 1034, 2093
BstUI	CGCG	3 cut(s)	327, 337, 1050
BstV1I	GCAGC	9 cut(s)	593, 692, 871, 1085, 1187, 1697, 1834, 2219, 2488
BstV2I	GAAGAC	1 cut(s)	2587
BstX2I	RGATCY	4 cut(s)	44, 50, 153, 216
BstXI	CCANNNNNNTGG	1 cut(s)	2347
BstYI	RGATCY	4 cut(s)	44, 50, 153, 216
BstZ17I	GTATAC	1 cut(s)	1892
BsuRI	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
BtgI	CCRYGG	3 cut(s)	479, 1540, 1974
BtgZI	GCGATG	1 cut(s)	1031
BtrI	CACGTC	1 cut(s)	237
BtsCI	GGATG	9 cut(s)	173, 282, 976, 1183, 1894, 1915, 2104, 2168, 2556
BtsI	GCAGTG	3 cut(s)	981, 1061, 2435
BtsIMutI	CAGTG	7 cut(s)	981, 1061, 1317, 1368, 1963, 2120, 2435
CaiI	CAGNNNCTG	1 cut(s)	2369
CciI	TCATGA	1 cut(s)	2194
CfoI	GCGC	4 cut(s)	188, 322, 329, 339
Cfr10I	RCCGGY	1 cut(s)	435
Cfr9I	CCCGGG	2 cut(s)	224, 565
Csp6I	GTAC	4 cut(s)	406, 1617, 2079, 2226
CspAI	ACCGGT	1 cut(s)	435
CspCI	CAANNNNNGTGG	2 cut(s)	1333, 1368
CviQI	GTAC	4 cut(s)	406, 1617, 2079, 2226
DdeI	CTNAG	9 cut(s)	106, 1086, 1228, 1371, 1532, 1611, 2127, 2247, 2542
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	2 cut(s)	538, 1516
Eam1104I	CTCTTC	5 cut(s)	281, 773, 914, 935, 2559
EarI	CTCTTC	5 cut(s)	281, 773, 914, 935, 2559
EciI	GGCGGA	2 cut(s)	118, 380
Eco130I	CCWWGG	2 cut(s)	1540, 1974
Eco147I	AGGCCT	2 cut(s)	305, 520
Eco24I	GRGCYC	3 cut(s)	298, 573, 2055
Eco31I	GGTCTC	1 cut(s)	2534
Eco47I	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
Eco47III	AGCGCT	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	3 cut(s)	224, 455, 565
Eco91I	GGTNACC	2 cut(s)	1763, 2479
EcoNI	CCTNNNNNAGG	1 cut(s)	2176
EcoO109I	RGGNCCY	4 cut(s)	229, 569, 570, 728
EcoO65I	GGTNACC	2 cut(s)	1763, 2479
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	6 cut(s)	207, 300, 624, 1621, 1918, 2107
EcoT14I	CCWWGG	2 cut(s)	1540, 1974
EcoT38I	GRGCYC	3 cut(s)	298, 573, 2055
ErhI	CCWWGG	2 cut(s)	1540, 1974
FalI	AAGNNNNNCTT	2 cut(s)	1825, 1857
FaqI	GGGAC	2 cut(s)	242, 1226
FauI	CCCGC	6 cut(s)	67, 71, 744, 1043, 1094, 1800
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	1891
FokI	GGATG	9 cut(s)	160, 269, 983, 1170, 1881, 1902, 2091, 2175, 2563
FriOI	GRGCYC	3 cut(s)	298, 573, 2055
FspBI	CTAG	1 cut(s)	1830
GlaI	GCGC	4 cut(s)	187, 321, 328, 338
GsaI	CCCAGC	2 cut(s)	295, 851
GsuI	CTGGAG	2 cut(s)	230, 1941
HaeII	RGCGCY	2 cut(s)	189, 323
HaeIII	GGCC	9 cut(s)	305, 520, 540, 571, 730, 1518, 1674, 1882, 2453
HapII	CCGG	8 cut(s)	42, 48, 117, 183, 225, 436, 566, 1034
HhaI	GCGC	4 cut(s)	188, 322, 329, 339
Hin1I	GRCGYC	1 cut(s)	170
Hin6I	GCGC	4 cut(s)	186, 320, 327, 337
HinP1I	GCGC	4 cut(s)	186, 320, 327, 337
HindIII	AAGCTT	1 cut(s)	1247
HpaII	CCGG	8 cut(s)	42, 48, 117, 183, 225, 436, 566, 1034
HphI	GGTGA	9 cut(s)	106, 263, 515, 692, 760, 1330, 2115, 2365, 2473
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	6 cut(s)	172, 592, 787, 1108, 2350, 2495
HpyCH4III	ACNGT	5 cut(s)	903, 1078, 1175, 1967, 2152
HpyCH4IV	ACGT	2 cut(s)	170, 236
HpyF3I	CTNAG	9 cut(s)	106, 1086, 1228, 1371, 1532, 1611, 2127, 2247, 2542
HpySE526I	ACGT	2 cut(s)	170, 236
Hsp92I	GRCGYC	1 cut(s)	170
HspAI	GCGC	4 cut(s)	186, 320, 327, 337
KflI	GGGWCCC	1 cut(s)	229
Kpn2I	TCCGGA	2 cut(s)	41, 47
Ksp22I	TGATCA	1 cut(s)	28
LmnI	GCTCC	4 cut(s)	211, 1306, 1469, 2023
Lsp1109I	GCAGC	9 cut(s)	593, 692, 871, 1085, 1187, 1697, 1834, 2219, 2488
LweI	GCATC	4 cut(s)	291, 961, 1192, 2153
MaeI	CTAG	1 cut(s)	1830
MaeII	ACGT	2 cut(s)	170, 236
MaeIII	GTNAC	7 cut(s)	662, 1081, 1318, 1763, 1961, 2146, 2479
MbiI	CCGCTC	2 cut(s)	214, 1795
MfeI	CAATTG	2 cut(s)	532, 1323
MflI	RGATCY	4 cut(s)	44, 50, 153, 216
MlsI	TGGCCA	1 cut(s)	1518
MluNI	TGGCCA	1 cut(s)	1518
MlyI	GAGTC	3 cut(s)	80, 2262, 2276
MmeI	TCCRAC	3 cut(s)	108, 244, 333
Mox20I	TGGCCA	1 cut(s)	1518
MroI	TCCGGA	2 cut(s)	41, 47
MscI	TGGCCA	1 cut(s)	1518
MseI	TTAA	4 cut(s)	648, 1010, 1166, 1950
MslI	CAYNNNNRTG	5 cut(s)	931, 1290, 1333, 1373, 2086
Msp20I	TGGCCA	1 cut(s)	1518
MspA1I	CMGCKG	4 cut(s)	705, 982, 1200, 2033
MspI	CCGG	8 cut(s)	42, 48, 117, 183, 225, 436, 566, 1034
MunI	CAATTG	2 cut(s)	532, 1323
Mva1269I	GAATGC	2 cut(s)	849, 2326
MvaI	CCWGG	6 cut(s)	209, 302, 626, 1623, 1920, 2109
MvnI	CGCG	3 cut(s)	327, 337, 1050
NciI	CCSGG	5 cut(s)	225, 226, 566, 567, 1034
NcoI	CCATGG	2 cut(s)	1540, 1974
NmuCI	GTSAC	4 cut(s)	1081, 1318, 1961, 2479
NspI	RCATGY	4 cut(s)	930, 1146, 1332, 1890
OliI	CACNNNNGTG	1 cut(s)	2086
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	2194
PceI	AGGCCT	2 cut(s)	305, 520
PciI	ACATGT	1 cut(s)	926
PctI	GAATGC	2 cut(s)	849, 2326
PflFI	GACNNNGTC	1 cut(s)	238
PfoI	TCCNGGA	2 cut(s)	624, 1918
PinAI	ACCGGT	1 cut(s)	435
PleI	GAGTC	3 cut(s)	80, 2262, 2276
PpsI	GAGTC	3 cut(s)	80, 2262, 2276
PpuMI	RGGWCCY	1 cut(s)	229
PscI	ACATGT	1 cut(s)	926
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	6 cut(s)	207, 300, 624, 1621, 1918, 2107
PspEI	GGTNACC	2 cut(s)	1763, 2479
PspFI	CCCAGC	2 cut(s)	291, 847
PspGI	CCWGG	6 cut(s)	207, 300, 624, 1621, 1918, 2107
PspOMI	GGGCCC	1 cut(s)	569
PspPPI	RGGWCCY	1 cut(s)	229
PsrI	GAACNNNNNNTAC	2 cut(s)	1609, 1641
PstI	CTGCAG	1 cut(s)	2506
PstNI	CAGNNNCTG	1 cut(s)	2369
PsuI	RGATCY	4 cut(s)	44, 50, 153, 216
PsyI	GACNNNGTC	1 cut(s)	238
RsaI	GTAC	4 cut(s)	407, 1618, 2080, 2227
RsaNI	GTAC	4 cut(s)	406, 1617, 2079, 2226
RseI	CAYNNNNRTG	5 cut(s)	931, 1290, 1333, 1373, 2086
SaqAI	TTAA	4 cut(s)	648, 1010, 1166, 1950
SchI	GAGTC	3 cut(s)	80, 2262, 2276
SfaNI	GCATC	4 cut(s)	291, 961, 1192, 2153
SfcI	CTRYAG	2 cut(s)	2502, 2521
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
SlaI	CTCGAG	1 cut(s)	455
SmaI	CCCGGG	2 cut(s)	226, 567
SmiMI	CAYNNNNRTG	5 cut(s)	931, 1290, 1333, 1373, 2086
SmlI	CTYRAG	3 cut(s)	455, 1061, 1796
SmoI	CTYRAG	3 cut(s)	455, 1061, 1796
SseBI	AGGCCT	2 cut(s)	305, 520
SspMI	CTAG	1 cut(s)	1830
StuI	AGGCCT	2 cut(s)	305, 520
StyI	CCWWGG	2 cut(s)	1540, 1974
TaaI	ACNGT	5 cut(s)	903, 1078, 1175, 1967, 2152
TaiI	ACGT	2 cut(s)	173, 239
TaqI	TCGA	3 cut(s)	456, 1393, 2432
TatI	WGTACW	3 cut(s)	405, 1616, 2078
TauI	GCSGC	7 cut(s)	69, 365, 540, 982, 1183, 1200, 1453
Tru1I	TTAA	4 cut(s)	648, 1010, 1166, 1950
Tru9I	TTAA	4 cut(s)	648, 1010, 1166, 1950
TscAI	CASTG	7 cut(s)	981, 1061, 1317, 1375, 1970, 2120, 2442
TseFI	GTSAC	4 cut(s)	1081, 1318, 1961, 2479
TseI	GCWGC	9 cut(s)	606, 705, 859, 1098, 1200, 1685, 1822, 2207, 2501
Tsp45I	GTSAC	4 cut(s)	1081, 1318, 1961, 2479
TspDTI	ATGAA	5 cut(s)	17, 1592, 2474, 2567, 2571
TspGWI	ACGGA	3 cut(s)	241, 253, 1851
TspMI	CCCGGG	2 cut(s)	224, 565
TspRI	CASTG	7 cut(s)	981, 1061, 1317, 1375, 1970, 2120, 2442
Tth111I	GACNNNGTC	1 cut(s)	238
VpaK11BI	GGWCC	7 cut(s)	76, 229, 240, 899, 1436, 1544, 1978
XagI	CCTNNNNNAGG	1 cut(s)	2176
XapI	RAATTY	4 cut(s)	110, 652, 1568, 2445
XceI	RCATGY	4 cut(s)	930, 1146, 1332, 1890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1653
XhoI	CTCGAG	1 cut(s)	455
XmaI	CCCGGG	2 cut(s)	224, 565
XmiI	GTMKAC	1 cut(s)	1891
XspI	CTAG	1 cut(s)	1830
ZraI	GACGTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.