Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010326

Physical Location & Seq

Genomic Coordinates Reverse (-)

47176812 .. 47177434

Gene Structure 623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0355100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGACCTTGTCTATGGGTTTATAAGGGCTCAAGTGACAAGGCTTATGAATGTTGCATACAACTTGAAGATGAAAGTGGACATCTAGGCTTTCGACTTACCAAACACCTCACAGAAGCAGCAGCTCTTGCTTTCACAGTGAACCTCCAAGTTTTAGTGCCAAAAGTGCTTCCACTAAGAGAAATAATCCGACACCTGGTGGCTTCTAGGCTTCAGAAAAACAGCAGTACCAAATGCCAAAATCTAGAAGCAGTTGGAGTTGGTTTGAATATAGAGGCTGGAATTCAACACTTTTGTCTCCACCCTGGTGGAAGAGCAATTATAAATGGGATAGGTAAGAGCTTATCATTAAGCGACTATGATCTTGAGCCATCTAGAATGGCGCTTTACAGATTTGGTAACACATCAGCTGCTGTCTTTTGGTATGCTTTGGGATACATGGAAGCCAAACAAAGGCTTAAGAGGGGTGATAGGATTCTAATGAGTCGCTTTGGAGCAGGTTTTAAATGTAATAATATTGTTTGGGAAGTACTAAGGCCCCTTGATGATGTCAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-NF-X1

Protein Analysis

186

Amino Acids

20.71

Weight (kDa)

8.93

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	8 - 68	1.6e-15	FAE1/Type III polyketide synthase-like protein
Chal_sti_synt_C	PF02797	92 - 167	2.3e-09	Chalcone and stilbene synthases, C-terminal domain
ACP_syn_III_C	PF08541	94 - 176	1.1e-10	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05660
fragaria_vesca	FvH4_7g24480
malus_domestica	MD00G1166700.v1.1 MD07G1222000.v1.1
prunus_persica	Prupe.2G250200_v2.0.a1
pyrus_communis	pycom07g20050
rosa_chinensis	RchiOBHm_Chr1g0370241
rosa_laevigata	RLG00000027066
rosa_multiflora	Rmu_co8251429.1_g000001 Rmu_co8258023.1_g000001 Rmu_sc0018500.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286720 Rroxscaffold_4G00287290
rosa_rugosa	Rorug01G0354900 Rorug01G0355000 Rorug01G0355100
rosa_samantha	Rh1AG363700 Rh1BG326800 Rh1CG340100 Rh1DG357200
rosa_wichuraiana	Rw1G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	24, 323
Acc36I	ACCTGC	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	2 cut(s)	229, 531
AfiI	CCNNNNNNNGG	2 cut(s)	196, 453
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	3 cut(s)	68, 268, 287
AjnI	CCWGG	2 cut(s)	195, 304
AleI	CACNNNNGTG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	125, 342, 410
AluI	AGCT	3 cut(s)	125, 342, 410
Alw26I	GTCTC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	3 cut(s)	119, 122, 410
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	5, 537
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	5
BaeI	ACNNNNGTAYC	2 cut(s)	211, 244
BanII	GRGCYC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	131, 134, 397
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	2 cut(s)	197, 306
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	4 cut(s)	86, 207, 245, 375
BfoI	RGCGCY	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	120, 123, 411
BlsI	GCNGC	3 cut(s)	121, 124, 412
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	2 cut(s)	197, 306
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 537
BmiI	GGNNCC	2 cut(s)	6, 539
BmrFI	CCNGG	2 cut(s)	197, 306
BpuEI	CTTGAG	2 cut(s)	16, 386
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 453
BseBI	CCWGG	2 cut(s)	197, 306
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	196, 453
BseXI	GCAGC	3 cut(s)	131, 134, 397
BshFI	GGCC	1 cut(s)	538
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	196, 453
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	6, 539
BspMI	ACCTGC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	197, 306
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	307
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	176, 533
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 166
BstNI	CCWGG	2 cut(s)	197, 306
BstSCI	CCNGG	2 cut(s)	195, 304
BstV1I	GCAGC	3 cut(s)	131, 134, 397
BstXI	CCANNNNNNTGG	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	488
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	5, 537
CsiI	ACCWGGT	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	228, 530
CviAII	CATG	1 cut(s)	439
CviQI	GTAC	2 cut(s)	228, 530
DdeI	CTNAG	2 cut(s)	176, 533
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraI	TTTAAA	1 cut(s)	505
DraIII	CACNNNGTG	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	197
EcoO109I	RGGNCCY	2 cut(s)	5, 537
EcoRI	GAATTC	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	195, 304
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	1 cut(s)	442
FaiI	YATR	9 cut(s)	16, 24, 48, 59, 272, 323, 360, 426, 440
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	120, 123, 411
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	120, 123, 411
FspBI	CTAG	4 cut(s)	86, 207, 245, 375
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	3 cut(s)	120, 123, 411
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	538
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	2 cut(s)	475, 484
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	2 cut(s)	80, 142
Hpy188I	TCNGA	3 cut(s)	191, 216, 560
Hpy188III	TCNNGA	3 cut(s)	245, 365, 375
Hpy8I	GTNNAC	2 cut(s)	80, 142
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 166
HpyF3I	CTNAG	2 cut(s)	176, 533
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	1 cut(s)	361
LguI	GCTCTTC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	494
LpnPI	CCDG	6 cut(s)	182, 209, 264, 291, 318, 483
Lsp1109I	GCAGC	3 cut(s)	131, 134, 397
MabI	ACCWGGT	1 cut(s)	195
MaeI	CTAG	4 cut(s)	86, 207, 245, 375
MaeIII	GTNAC	2 cut(s)	35, 398
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	2 cut(s)	80, 324
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	2 cut(s)	282, 318
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	2 cut(s)	214, 235
MnlI	CCTC	4 cut(s)	119, 155, 268, 456
MseI	TTAA	3 cut(s)	350, 459, 504
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	197, 306
MvaI	CCWGG	2 cut(s)	197, 306
MwoI	GCNNNNNNNGC	2 cut(s)	128, 166
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	2 cut(s)	6, 539
NmuCI	GTSAC	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	475
PflFI	GACNNNGTC	1 cut(s)	9
PkrI	GCNGC	3 cut(s)	121, 124, 412
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PpuMI	RGGWCCY	1 cut(s)	5
PsiI	TTATAA	2 cut(s)	24, 323
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	2 cut(s)	195, 304
PspGI	CCWGG	2 cut(s)	195, 304
PspN4I	GGNNCC	2 cut(s)	6, 539
PspPI	GGNCC	2 cut(s)	5, 537
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	413
PsyI	GACNNNGTC	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	229, 531
RsaNI	GTAC	2 cut(s)	228, 530
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	307
SaqAI	TTAA	3 cut(s)	350, 459, 504
SatI	GCNGC	3 cut(s)	120, 123, 411
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	5, 537
ScaI	AGTACT	1 cut(s)	531
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	197, 306
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	9 cut(s)	10, 111, 127, 147, 198, 337, 344, 412, 502
SexAI	ACCWGGT	1 cut(s)	195
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	3 cut(s)	31, 365, 458
SmoI	CTYRAG	3 cut(s)	31, 365, 458
Sse9I	AATT	2 cut(s)	282, 318
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	4 cut(s)	86, 207, 245, 375
StyD4I	CCNGG	2 cut(s)	195, 304
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	282, 318
TatI	WGTACW	1 cut(s)	529
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	3 cut(s)	350, 459, 504
Tru9I	TTAA	3 cut(s)	350, 459, 504
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	119, 122, 410
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	63, 87
TspRI	CASTG	1 cut(s)	144
Tth111I	GACNNNGTC	1 cut(s)	9
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	282
XbaI	TCTAGA	2 cut(s)	244, 374
XspI	CTAG	4 cut(s)	86, 207, 245, 375
ZrmI	AGTACT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.