Rw1G032000

NF-X1-type zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
60193644 .. 60198879
5236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G032000.1

Sequence Viewer

Length: 1617 bp
ATGCTGGGGTGTGGGCAGCATGAGTGTAGTAAAGGGTGTCATTCAGGGGAGTGTGGACCGTGCCCGTTTCAGGGGAAGAGAACATGTCCGTGTGGGAAGAGAGTGCATGAAGGATTGTCTTGCAAGGATGCAGTGCCGCTGTGTGGTGCAACTTGTGATAAGATGTTAAGCTGTGGCTACCATAGGTGCCCGGAGAGGTGTCATCGCGGGCAGTGCCTTGAGACTTGCAGAACAGTTGTCACTAAGAGGTGTCGCTGCGGGGGCTTGAAGAAGGAGGTTCCTTGTCATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAGATTAAGAGACTGCGGGCGGCATCCTTGTAAACGCCGCTGCTGTGATGGGGACTGCCCACCATGCTCAGAGATTTGTGGCAGAAAGCTTCGCTGTAAGAACCACAAATGCCCATCTCCCTGCCATAGAGGTGCTTGTGCTCCTTGCCCAGTGATGGTGACAATTGCATGTTTATGTGGTGCCACACACTTTGAGGTTCCTTGCGGCACTGAGATGGATCAGAAGCCTCCTCGATGTCGTAAGCCATGCCCTATTACTCCTTTATGCAGGCATGGACCAAATAGCAAGCCGCACAAATGCCATTATGGAGCTTGCCACCCATGTAAACTACTTTGTGAAGAAGAATACCCATGTGGCCACAACTGCAAACTAAGGTGCCATGGACCTAAACCTCCTCCAAATCCAGAATTTACATCGAAACCGAAGAAAAAGAAGTCTTTTCATCAGCCTGAGTGTACTCCTGGTTCTCCATGCCCTCCATGCCCAGAGCTTGTTTGGAGATCATGTGTGGGCCAGCACTTTGCAGCAGACAGAATGATGGTCTGTTCAGATAAATCACTATTTTCCTGCGATAACTTGTGTGGGAATCCTCTACCTTGTGGTAACCACTTTTGCACCAAAACTTGCCACCCGCTCAAGAATCAGTCTTTGCCATCAGGGCAGCAAGCTAGAAGTGAGCCTTGTGAAGTGTGTTATCTTCCTTGCGAAAAGGAGAGGGCGCCAGCATGTATACATCCTTGCCCCTTGTCATGTCATCCTGGAGACTGCCCTCCTTGCAAAGTGCTCGTTAAGCGATCATGTCACTGTGGTTCCATGGTCCATGTTTTTGAGTGCATATACTATAATAGTTTGTCTGAAAAGGAGCAAACCGCTGTTCGTTCTTGTAAGGGGCTCTGTCATAGAAAGTTGCCTTATTGTACACATCTGTGCCCAGAGACTTGTCATCCTGGTCAGTGCTCATCACCTGAGAAGTGCTCTAAAAAGGTTACTGTTCGTTGTGGATGCCAGACCTTGAAAAGGGAGTGGTTATGTCATGATGTGCAGGCAGCCTATCGCAATGCTGGTACTGATCCCAAAGATATACCTAAGAATCAATTTGGACTTGGACTCCTCCCTTGCGACTCTAATTGCAAAAGTAAACAAAAGGTTGTTGATTCAGAATTGCATTCTCGCAGACCTAAAGTTGTGGAGGTGAAGGAACCAGATACTGATAAGCCTGCACCAAGAGGAAGAAAAGGCGTGAACGAGGACAAGAAGTGGCACAAATCTCGACACTGCAAAAAATTTTGGCCCACATGA

Protein Analysis

538

Amino Acids

59.86

Weight (kDa)

8.87

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 186, 497, 693, 1036
AccBSI CCGCTC 1 cut(s) 952
AccI GTMKAC 1 cut(s) 1048
AccII CGCG 1 cut(s) 207
AclWI GGATC 2 cut(s) 543, 1382
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 2 cut(s) 725, 1601
AcyI GRCGYC 1 cut(s) 1037
AfaI GTAC 3 cut(s) 775, 1237, 1384
AfiI CCNNNNNNNGG 5 cut(s) 70, 71, 143, 472, 1335
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 268, 1333
AjnI CCWGG 3 cut(s) 778, 1075, 1264
AleI CACNNNNGTG 1 cut(s) 1243
AluBI AGCT 5 cut(s) 171, 406, 629, 808, 986
AluI AGCT 5 cut(s) 171, 406, 629, 808, 986
Alw21I GWGCWC 4 cut(s) 460, 1104, 1277, 1295
Alw26I GTCTC 4 cut(s) 215, 321, 1074, 1247
AlwI GGATC 2 cut(s) 543, 1382
AlwNI CAGNNNCTG 1 cut(s) 1526
AoxI GGCC 3 cut(s) 673, 829, 1607
ApeKI GCWGC 6 cut(s) 16, 255, 357, 842, 979, 1364
ApoI RAATTY 2 cut(s) 725, 1601
AspLEI GCGC 1 cut(s) 1039
AspS9I GGNCC 6 cut(s) 56, 593, 701, 829, 1135, 1608
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 3 cut(s) 487, 1272, 1522
AvaII GGWCC 4 cut(s) 56, 593, 701, 1135
BaeGI GKGCMC 3 cut(s) 65, 191, 1250
BalI TGGCCA 1 cut(s) 675
BanI GGYRCC 4 cut(s) 186, 497, 693, 1036
BanII GRGCYC 1 cut(s) 1212
Bbv12I GWGCWC 4 cut(s) 460, 1104, 1277, 1295
BbvI GCAGC 6 cut(s) 28, 242, 344, 854, 991, 1376
BccI CCATC 6 cut(s) 359, 439, 466, 526, 850, 979
BcgI CGANNNNNNTGC 4 cut(s) 1084, 1118, 1568, 1602
BciT130I CCWGG 3 cut(s) 780, 1077, 1266
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 4 cut(s) 215, 321, 1074, 1247
BfaI CTAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 1040
BglI GCCNNNNNGGC 1 cut(s) 976
Bme1390I CCNGG 4 cut(s) 191, 780, 1077, 1266
Bme18I GGWCC 4 cut(s) 56, 593, 701, 1135
BmgT120I GGNCC 6 cut(s) 56, 593, 701, 829, 1135, 1608
BmiI GGNNCC 8 cut(s) 188, 279, 499, 516, 695, 1038, 1129, 1518
BmrFI CCNGG 4 cut(s) 191, 780, 1077, 1266
BmrI ACTGGG 1 cut(s) 461
BmsI GCATC 3 cut(s) 118, 349, 1310
BmuI ACTGGG 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 1277, 1309
BpmI CTGGAG 1 cut(s) 1098
BpuEI CTTGAG 2 cut(s) 239, 938
BpuMI CCSGG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 1037
BsaJI CCNNGG 2 cut(s) 697, 1131
BsaXI ACNNNNNCTCC 4 cut(s) 808, 838, 1410, 1440
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 71, 143, 472, 1335
Bse1I ACTGG 1 cut(s) 467
Bse3DI GCAATG 1 cut(s) 1381
BseBI CCWGG 3 cut(s) 780, 1077, 1266
BseDI CCNNGG 2 cut(s) 697, 1131
BseGI GGATG 6 cut(s) 133, 340, 1051, 1072, 1261, 1325
BseLI CCNNNNNNNGG 5 cut(s) 70, 71, 143, 472, 1335
BseMI GCAATG 1 cut(s) 1381
BseMII CTCAG 4 cut(s) 399, 519, 759, 1275
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 3 cut(s) 537, 702, 1418
BseSI GKGCMC 3 cut(s) 65, 191, 1250
BseXI GCAGC 6 cut(s) 28, 242, 344, 854, 991, 1376
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 2 cut(s) 1379, 1521
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 675, 831, 1609
BshNI GGYRCC 4 cut(s) 186, 497, 693, 1036
BsiHKAI GWGCWC 4 cut(s) 460, 1104, 1277, 1295
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 5 cut(s) 70, 71, 143, 472, 1335
BsmAI GTCTC 4 cut(s) 215, 321, 1074, 1247
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 1483
BsnI GGCC 3 cut(s) 675, 831, 1609
Bsp1286I GDGCHC 8 cut(s) 65, 191, 460, 1104, 1212, 1250, 1277, 1295
Bsp1407I TGTACA 1 cut(s) 1235
Bsp143I GATC 4 cut(s) 535, 818, 1112, 1387
Bsp19I CCATGG 2 cut(s) 697, 1131
BspANI GGCC 3 cut(s) 675, 831, 1609
BspCNI CTCAG 4 cut(s) 398, 520, 760, 1276
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 1351
BspLI GGNNCC 8 cut(s) 188, 279, 499, 516, 695, 1038, 1129, 1518
BspPI GGATC 2 cut(s) 543, 1382
BspT107I GGYRCC 4 cut(s) 186, 497, 693, 1036
BsrBI CCGCTC 1 cut(s) 952
BsrDI GCAATG 1 cut(s) 1381
BsrGI TGTACA 1 cut(s) 1235
BsrI ACTGG 1 cut(s) 467
BssECI CCNNGG 2 cut(s) 697, 1131
BssMI GATC 4 cut(s) 535, 818, 1112, 1387
BssNAI GTATAC 1 cut(s) 1049
BssNI GRCGYC 1 cut(s) 1037
BssT1I CCWWGG 2 cut(s) 697, 1131
Bst1107I GTATAC 1 cut(s) 1049
Bst2UI CCWGG 3 cut(s) 780, 1077, 1266
Bst4CI ACNGT 4 cut(s) 60, 235, 1124, 1309
Bst6I CTCTTC 2 cut(s) 71, 92
BstACI GRCGYC 1 cut(s) 1037
BstAUI TGTACA 1 cut(s) 1235
BstDEI CTNAG 7 cut(s) 243, 385, 528, 689, 768, 1284, 1404
BstDSI CCRYGG 2 cut(s) 697, 1131
BstEII GGTNACC 1 cut(s) 920
BstENI CCTNNNNNAGG 1 cut(s) 1333
BstF5I GGATG 6 cut(s) 133, 340, 1051, 1072, 1261, 1325
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 1 cut(s) 1039
BstKTI GATC 4 cut(s) 538, 821, 1115, 1390
BstMAI GTCTC 4 cut(s) 215, 321, 1074, 1247
BstMBI GATC 4 cut(s) 535, 818, 1112, 1387
BstMWI GCNNNNNNNGC 8 cut(s) 213, 261, 381, 681, 798, 976, 1092, 1108
BstNI CCWGG 3 cut(s) 780, 1077, 1266
BstNSI RCATGY 4 cut(s) 87, 303, 489, 1047
BstPI GGTNACC 1 cut(s) 920
BstSCI CCNGG 4 cut(s) 189, 778, 1075, 1264
BstSLI GKGCMC 3 cut(s) 65, 191, 1250
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 6 cut(s) 28, 242, 344, 854, 991, 1376
BstZ17I GTATAC 1 cut(s) 1049
BsuRI GGCC 3 cut(s) 675, 831, 1609
BtgI CCRYGG 2 cut(s) 697, 1131
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 6 cut(s) 133, 340, 1051, 1072, 1261, 1325
BtsI GCAGTG 3 cut(s) 138, 218, 1591
BtsIMutI CAGTG 7 cut(s) 138, 218, 474, 525, 1120, 1277, 1591
CaiI CAGNNNCTG 1 cut(s) 1526
CciI TCATGA 1 cut(s) 1351
CfoI GCGC 1 cut(s) 1039
Cfr13I GGNCC 6 cut(s) 56, 593, 701, 829, 1135, 1608
Csp6I GTAC 3 cut(s) 774, 1236, 1383
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviQI GTAC 3 cut(s) 774, 1236, 1383
DdeI CTNAG 7 cut(s) 243, 385, 528, 689, 768, 1284, 1404
DinI GGCGCC 1 cut(s) 1038
DpnI GATC 4 cut(s) 537, 820, 1114, 1389
DpnII GATC 4 cut(s) 535, 818, 1112, 1387
EaeI YGGCCR 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 71, 92
EarI CTCTTC 2 cut(s) 71, 92
Eco130I CCWWGG 2 cut(s) 697, 1131
Eco24I GRGCYC 1 cut(s) 1212
Eco47I GGWCC 4 cut(s) 56, 593, 701, 1135
Eco91I GGTNACC 1 cut(s) 920
EcoNI CCTNNNNNAGG 1 cut(s) 1333
EcoO65I GGTNACC 1 cut(s) 920
EcoRII CCWGG 3 cut(s) 778, 1075, 1264
EcoT14I CCWWGG 2 cut(s) 697, 1131
EcoT38I GRGCYC 1 cut(s) 1212
EgeI GGCGCC 1 cut(s) 1038
EheI GGCGCC 1 cut(s) 1038
ErhI CCWWGG 2 cut(s) 697, 1131
FalI AAGNNNNNCTT 2 cut(s) 982, 1014
FaqI GGGAC 1 cut(s) 383
FauI CCCGC 4 cut(s) 200, 251, 326, 957
FblI GTMKAC 1 cut(s) 1048
FokI GGATG 6 cut(s) 140, 327, 1038, 1059, 1248, 1332
FriOI GRGCYC 1 cut(s) 1212
FspBI CTAG 1 cut(s) 987
GlaI GCGC 1 cut(s) 1038
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 1098
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 3 cut(s) 675, 831, 1609
HapII CCGG 1 cut(s) 191
HhaI GCGC 1 cut(s) 1039
Hin1I GRCGYC 1 cut(s) 1037
Hin6I GCGC 1 cut(s) 1037
HinP1I GCGC 1 cut(s) 1037
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 6 cut(s) 904, 958, 1408, 1425, 1439, 1472
HpaII CCGG 1 cut(s) 191
HphI GGTGA 3 cut(s) 487, 1272, 1522
Hpy166II GTNNAC 8 cut(s) 56, 350, 644, 774, 1049, 1238, 1457, 1561
Hpy188I TCNGA 5 cut(s) 388, 540, 868, 1174, 1477
Hpy188III TCNNGA 5 cut(s) 290, 722, 955, 1352, 1587
Hpy8I GTNNAC 8 cut(s) 56, 350, 644, 774, 1049, 1238, 1457, 1561
HpyAV CCTTC 3 cut(s) 104, 265, 1507
HpyCH4III ACNGT 4 cut(s) 60, 235, 1124, 1309
HpyF10VI GCNNNNNNNGC 8 cut(s) 213, 261, 381, 681, 798, 976, 1092, 1108
HpyF3I CTNAG 7 cut(s) 243, 385, 528, 689, 768, 1284, 1404
Hsp92I GRCGYC 1 cut(s) 1037
HspAI GCGC 1 cut(s) 1037
KasI GGCGCC 1 cut(s) 1036
Kzo9I GATC 4 cut(s) 535, 818, 1112, 1387
LmnI GCTCC 3 cut(s) 463, 626, 1180
Lsp1109I GCAGC 6 cut(s) 28, 242, 344, 854, 991, 1376
LweI GCATC 3 cut(s) 118, 349, 1310
MaeI CTAG 1 cut(s) 987
MaeIII GTNAC 5 cut(s) 238, 475, 920, 1118, 1303
MalI GATC 4 cut(s) 537, 820, 1114, 1389
MbiI CCGCTC 1 cut(s) 952
MboI GATC 4 cut(s) 535, 818, 1112, 1387
MboII GAAGA 8 cut(s) 88, 109, 280, 668, 671, 754, 1007, 1560
MfeI CAATTG 1 cut(s) 480
MhlI GDGCHC 8 cut(s) 65, 191, 460, 1104, 1212, 1250, 1277, 1295
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 6 cut(s) 480, 725, 1412, 1444, 1478, 1601
MluNI TGGCCA 1 cut(s) 675
Mly113I GGCGCC 1 cut(s) 1037
MlyI GAGTC 2 cut(s) 1419, 1433
Mox20I TGGCCA 1 cut(s) 675
MscI TGGCCA 1 cut(s) 675
MseI TTAA 3 cut(s) 167, 323, 1107
MslI CAYNNNNRTG 5 cut(s) 88, 447, 490, 530, 1243
Msp20I TGGCCA 1 cut(s) 675
MspA1I CMGCKG 3 cut(s) 139, 357, 1190
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 4 cut(s) 191, 780, 1077, 1266
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 1483
MvaI CCWGG 3 cut(s) 780, 1077, 1266
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 8 cut(s) 213, 261, 381, 681, 798, 976, 1092, 1108
NarI GGCGCC 1 cut(s) 1037
NciI CCSGG 1 cut(s) 191
NcoI CCATGG 2 cut(s) 697, 1131
NdeII GATC 4 cut(s) 535, 818, 1112, 1387
NlaIV GGNNCC 8 cut(s) 188, 279, 499, 516, 695, 1038, 1129, 1518
NmuCI GTSAC 3 cut(s) 238, 475, 1118
NspI RCATGY 4 cut(s) 87, 303, 489, 1047
OliI CACNNNNGTG 1 cut(s) 1243
PagI TCATGA 1 cut(s) 1351
PciI ACATGT 1 cut(s) 83
PctI GAATGC 1 cut(s) 1483
PfeI GAWTC 4 cut(s) 904, 958, 1408, 1472
PfoI TCCNGGA 1 cut(s) 1075
PleI GAGTC 2 cut(s) 1419, 1433
PluTI GGCGCC 1 cut(s) 1040
PpsI GAGTC 2 cut(s) 1419, 1433
PscI ACATGT 1 cut(s) 83
Psp6I CCWGG 3 cut(s) 778, 1075, 1264
PspEI GGTNACC 1 cut(s) 920
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 3 cut(s) 778, 1075, 1264
PspN4I GGNNCC 8 cut(s) 188, 279, 499, 516, 695, 1038, 1129, 1518
PspPI GGNCC 6 cut(s) 56, 593, 701, 829, 1135, 1608
PsrI GAACNNNNNNTAC 2 cut(s) 766, 798
PstNI CAGNNNCTG 1 cut(s) 1526
RsaI GTAC 3 cut(s) 775, 1237, 1384
RsaNI GTAC 3 cut(s) 774, 1236, 1383
RseI CAYNNNNRTG 5 cut(s) 88, 447, 490, 530, 1243
SaqAI TTAA 3 cut(s) 167, 323, 1107
Sau3AI GATC 4 cut(s) 535, 818, 1112, 1387
Sau96I GGNCC 6 cut(s) 56, 593, 701, 829, 1135, 1608
SchI GAGTC 2 cut(s) 1419, 1433
ScrFI CCNGG 4 cut(s) 191, 780, 1077, 1266
SduI GDGCHC 8 cut(s) 65, 191, 460, 1104, 1212, 1250, 1277, 1295
SfaNI GCATC 3 cut(s) 118, 349, 1310
SfoI GGCGCC 1 cut(s) 1038
SinI GGWCC 4 cut(s) 56, 593, 701, 1135
SmiMI CAYNNNNRTG 5 cut(s) 88, 447, 490, 530, 1243
SmlI CTYRAG 2 cut(s) 218, 953
SmoI CTYRAG 2 cut(s) 218, 953
Sse9I AATT 6 cut(s) 480, 725, 1412, 1444, 1478, 1601
SspDI GGCGCC 1 cut(s) 1036
SspMI CTAG 1 cut(s) 987
StyD4I CCNGG 4 cut(s) 189, 778, 1075, 1264
StyI CCWWGG 2 cut(s) 697, 1131
TaaI ACNGT 4 cut(s) 60, 235, 1124, 1309
TaqI TCGA 3 cut(s) 550, 734, 1588
TasI AATT 6 cut(s) 480, 725, 1412, 1444, 1478, 1601
TatI WGTACW 2 cut(s) 773, 1235
TauI GCSGC 5 cut(s) 139, 340, 357, 525, 610
TfiI GAWTC 4 cut(s) 904, 958, 1408, 1472
Tru1I TTAA 3 cut(s) 167, 323, 1107
Tru9I TTAA 3 cut(s) 167, 323, 1107
TscAI CASTG 7 cut(s) 138, 218, 474, 532, 1127, 1277, 1598
TseFI GTSAC 3 cut(s) 238, 475, 1118
TseI GCWGC 6 cut(s) 16, 255, 357, 842, 979, 1364
Tsp45I GTSAC 3 cut(s) 238, 475, 1118
TspDTI ATGAA 2 cut(s) 123, 749
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 7 cut(s) 138, 218, 474, 532, 1127, 1277, 1598
VpaK11BI GGWCC 4 cut(s) 56, 593, 701, 1135
XagI CCTNNNNNAGG 1 cut(s) 1333
XapI RAATTY 2 cut(s) 725, 1601
XceI RCATGY 4 cut(s) 87, 303, 489, 1047
XcmI CCANNNNNNNNNTGG 1 cut(s) 810
XmiI GTMKAC 1 cut(s) 1048
XspI CTAG 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.