Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007330

Physical Location & Seq

Genomic Coordinates Forward (+)

40546923 .. 40553340

Gene Structure 6418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1174500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGGTGGTCTTGTTTTTGCTGTGTTGTTGTGCTTCAAGCATTCGTTTGTGGTTGCGGCCCCTGTTTATTTTGTTTACTTGTTGAGGCATTATTGTTGGAAAGGATTGGTGAGGGGTTTCTGGCTGCTTTCGGTTTTGGGGGCTGTTGTTGTGGCTGGCTGTTTTTACATTGGCATATGGCCCGTTTGTGTATCATGGGCAGGTTACCCCTGCGACAACCTTTATCCTGGTTCTGATTGCCTTATCTGCTTGTCTCAAGCTTGGAGACATCGACAGCCATGGTTGATTACAAGATGGGTAGCCTATGCATACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

106

Amino Acids

12.0

Weight (kDa)

8.93

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	1 - 64	2.2e-11	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44660
fragaria_vesca	FvH4_7g08900 FvH4_7g08900
malus_domestica	MD00G1174500.v1.1 MD02G1223000.v1.1 MD07G1091800.v1.1 MD07G1092000.v1.1 MD07G1092500.v1.1
prunus_persica	Prupe.2G117600_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1
pyrus_communis	pycom07g07510 pycom07g07520 pycom07g07570
rosa_chinensis	RchiOBHm_Chr1g0344321
rosa_laevigata	RLG00000028908
rosa_multiflora	Rmu_sc0002198.1_g000003
rosa_roxburghii	Rroxscaffold_4G00309900
rosa_rugosa	Rorug01G0173200
rosa_samantha	Rh1AG189300 Rh1BG155900 Rh1CG174900 Rh1DG187400
rosa_wichuraiana	Rw1G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AciI	CCGC	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	258, 259
AoxI	GGCC	2 cut(s)	57, 179
ApeKI	GCWGC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	58, 180
AsuHPI	GGTGA	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	258, 259
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	57, 125
BlsI	GCNGC	2 cut(s)	58, 126
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	58, 180
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	111
BshFI	GGCC	2 cut(s)	59, 181
BsmAI	GTCTC	2 cut(s)	258, 259
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	59, 181
Bsp19I	CCATGG	1 cut(s)	278
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	59, 181
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	278
BstEII	GGTNACC	1 cut(s)	203
BstMAI	GTCTC	2 cut(s)	258, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	228
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	59, 181
BtgI	CCRYGG	1 cut(s)	278
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	58, 180
CviAII	CATG	3 cut(s)	195, 279, 315
CviJI	RGCY	9 cut(s)	59, 124, 143, 155, 159, 181, 260, 277, 302
CviKI_1	RGCY	9 cut(s)	59, 124, 143, 155, 159, 181, 260, 277, 302
Eco130I	CCWWGG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	3 cut(s)	198, 282, 318
FaiI	YATR	7 cut(s)	176, 178, 196, 280, 306, 310, 316
FatI	CATG	3 cut(s)	194, 278, 314
FauNDI	CATATG	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	57, 125
Fsp4HI	GCNGC	2 cut(s)	57, 125
GluI	GCNGC	2 cut(s)	57, 125
HaeIII	GGCC	2 cut(s)	59, 181
Hin1II	CATG	3 cut(s)	198, 282, 318
HindIII	AAGCTT	1 cut(s)	258
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	198, 282, 318
LpnPI	CCDG	7 cut(s)	75, 106, 141, 186, 213, 223, 240
Lsp1109I	GCAGC	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	78, 105
Mph1103I	ATGCAT	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	278
NdeI	CATATG	1 cut(s)	176
NlaIII	CATG	3 cut(s)	198, 282, 318
NlaIV	GGNNCC	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	310
PctI	GAATGC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	58, 126
Psp6I	CCWGG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	58, 180
RseI	CAYNNNNRTG	1 cut(s)	313
SatI	GCNGC	2 cut(s)	57, 125
Sau96I	GGNCC	2 cut(s)	58, 180
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	3 cut(s)	205, 222, 262
SmiMI	CAYNNNNRTG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SsiI	CCGC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	278
TaqI	TCGA	1 cut(s)	271
TauI	GCSGC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.