Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007330

Physical Location & Seq

Genomic Coordinates Forward (+)

9682184 .. 9685908

Gene Structure 3725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1091800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGCGAAAGATGATCTGGGTTCTGGTGGTTTGGTCGCCAATGCTTATTATTGTAGACCGTTTGCATATCCAGCACAATGGGTTTTTGCTTGGGATTTTGTTGATTTCGCCTTCGCGTTTGGAGGAAGGGAGGGACTTTACTGGTGGGCTTGTTTTTGCTATGTTGTTGTGCTTCAAGCATTTGTTTGCGGTTGTGGCGCCTATTTATTTTGTTTACTTGTTGAGGCATTATTGTTGGAAAGGATTGGTGAGGGGTTTTTGGCGGCTTTCGGTTTTGGGGCTGTTGTTGTGGCTGGCTGGTTTTACATTGGCATATGGCCCGTTTGTGTATCATGGGGGACTTTGCCATGCCTATTGGGCGGGCACCAAATTTTTTGGTGTTCTATATCATACTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

134

Amino Acids

15.45

Weight (kDa)

9.9

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	2 - 121	1.6e-28	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44660
fragaria_vesca	FvH4_7g08900 FvH4_7g08900
malus_domestica	MD00G1174500.v1.1 MD02G1223000.v1.1 MD07G1091800.v1.1 MD07G1092000.v1.1 MD07G1092500.v1.1
prunus_persica	Prupe.2G117600_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1
pyrus_communis	pycom07g07510 pycom07g07520 pycom07g07570
rosa_chinensis	RchiOBHm_Chr1g0344321
rosa_laevigata	RLG00000028908
rosa_multiflora	Rmu_sc0002198.1_g000003
rosa_roxburghii	Rroxscaffold_4G00309900
rosa_rugosa	Rorug01G0173200
rosa_samantha	Rh1AG189300 Rh1BG155900 Rh1CG174900 Rh1DG187400
rosa_wichuraiana	Rw1G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	199, 365
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	118
AciI	CCGC	3 cut(s)	191, 265, 362
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	178
AoxI	GGCC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	199, 365
BfaI	CTAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	203
BglI	GCCNNNNNGGC	1 cut(s)	359
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	201, 367
BsaHI	GRCGYC	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	148
BseSI	GKGCMC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	321
BshNI	GGYRCC	2 cut(s)	199, 365
BslFI	GGGAC	2 cut(s)	149, 354
BsmFI	GGGAC	2 cut(s)	149, 354
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	3 cut(s)	191, 265, 362
BspANI	GGCC	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	201, 367
BspT107I	GGYRCC	2 cut(s)	199, 365
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	297, 364
BstFNI	CGCG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 197, 359
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	297, 364
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	320
CviAII	CATG	2 cut(s)	335, 350
CviJI	RGCY	6 cut(s)	151, 268, 283, 295, 299, 321
CviKI_1	RGCY	6 cut(s)	151, 268, 283, 295, 299, 321
DinI	GGCGCC	1 cut(s)	201
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EgeI	GGCGCC	1 cut(s)	201
EheI	GGCGCC	1 cut(s)	201
FaeI	CATG	2 cut(s)	338, 353
FaiI	YATR	8 cut(s)	69, 164, 316, 318, 336, 351, 388, 393
FaqI	GGGAC	2 cut(s)	149, 354
FatI	CATG	2 cut(s)	334, 349
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	321
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	338, 353
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	58, 217
Hpy8I	GTNNAC	2 cut(s)	58, 217
HpyAV	CCTTC	2 cut(s)	122, 123
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 197, 359
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	338, 353
HspAI	GCGC	1 cut(s)	200
KasI	GGCGCC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	6 cut(s)	4, 11, 86, 129, 281, 285
MaeI	CTAG	1 cut(s)	396
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	1 cut(s)	371
Mly113I	GGCGCC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	4 cut(s)	118, 126, 219, 246
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	73, 197, 359
NarI	GGCGCC	1 cut(s)	200
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	2 cut(s)	338, 353
NlaIV	GGNNCC	2 cut(s)	201, 367
PkrI	GCNGC	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	201, 367
PspPI	GGNCC	1 cut(s)	320
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	368
SfoI	GGCGCC	1 cut(s)	201
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	3 cut(s)	191, 265, 362
SspDI	GGCGCC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	62
TasI	AATT	1 cut(s)	371
TauI	GCSGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.