Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007330

Physical Location & Seq

Genomic Coordinates Reverse (-)

31718068 .. 31722732

Gene Structure 4665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAATCACAAAGCACCCAGAAGCTGAAAAACCCTCCAAAACCACCCCACAATCCCATCTCCGAGCTATGGTGGTTCTTCGCCGCAGCCACCTGCGTAAAGCTGCTTCTGATCCCAGCCTACAGGAGCACAGACTTCGAGGTCCATCGCCATTGGCTTGCCATAACTCACTCTCTTCCTCTCTCTCAATGGTACTTAGACGAGACCAGCCCTTGGACTCTGGACTACCCTCCATTCTTTGCCTACTTCGAGCGCTTCCTCTCCATTTTCGCAAACCTCATTGACCCACAAATGGTCCACCTCCACAAAGGCCTCAACTACAGCTCAGACACAGTGGTTTACTTTCAAAGAGTTTCGGTTTGTGTTTCGGATTTGTGTCTTTTGTATGGGGTTTATAGATTGACTAGGAATTTGGATCCGGTGAGGCGAAAACTGATCTGGGTTTTGGTTGTTTGGTCTCCTATGCTTGTGGTCGTGGACCATTTGCATTTTCAGTACAATGGGTTTTTGCTTGGGGTTCTGCTGATTTCGCTTTCGTATTTGGAGGAAGGGAGGGGACTTGATGGGTGGGCTTGTGTTTGCTGTTTTGTTGTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

199

Amino Acids

23.24

Weight (kDa)

6.69

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	30 - 196	4.1e-65	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44660
fragaria_vesca	FvH4_7g08900 FvH4_7g08900
malus_domestica	MD00G1174500.v1.1 MD02G1223000.v1.1 MD07G1091800.v1.1 MD07G1092000.v1.1 MD07G1092500.v1.1
prunus_persica	Prupe.2G117600_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1
pyrus_communis	pycom07g07510 pycom07g07520 pycom07g07570
rosa_chinensis	RchiOBHm_Chr1g0344321
rosa_laevigata	RLG00000028908
rosa_multiflora	Rmu_sc0002198.1_g000003
rosa_roxburghii	Rroxscaffold_4G00309900
rosa_rugosa	Rorug01G0173200
rosa_samantha	Rh1AG189300 Rh1BG155900 Rh1CG174900 Rh1DG187400
rosa_wichuraiana	Rw1G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	101
AasI	GACNNNNNNGTC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	213
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	3 cut(s)	106, 410, 423
AcsI	RAATTY	1 cut(s)	409
AfaI	GTAC	2 cut(s)	194, 497
AfeI	AGCGCT	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	69, 213, 292
AgsI	TTSAA	1 cut(s)	347
AluBI	AGCT	4 cut(s)	25, 67, 103, 324
AluI	AGCT	4 cut(s)	25, 67, 103, 324
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	2 cut(s)	197, 462
AlwI	GGATC	3 cut(s)	106, 410, 423
AlwNI	CAGNNNCTG	1 cut(s)	25
Aor51HI	AGCGCT	1 cut(s)	254
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	86, 103
ApoI	RAATTY	1 cut(s)	409
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	3 cut(s)	142, 295, 478
AsuHPI	GGTGA	1 cut(s)	433
AvaII	GGWCC	3 cut(s)	142, 295, 478
BamHI	GGATCC	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	90, 98
BccI	CCATC	3 cut(s)	65, 153, 557
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcoDI	GTCTC	2 cut(s)	197, 462
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	2 cut(s)	121, 319
BfoI	RGCGCY	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	84, 87, 104
BlsI	GCNGC	3 cut(s)	85, 88, 105
Bme18I	GGWCC	3 cut(s)	142, 295, 478
BmgT120I	GGNCC	3 cut(s)	142, 295, 478
BmiI	GGNNCC	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	197, 462
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 213, 292
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	69, 213, 292
BseMII	CTCAG	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	90, 98
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	3 cut(s)	69, 213, 292
BsmAI	GTCTC	2 cut(s)	197, 462
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	312
Bso31I	GGTCTC	2 cut(s)	197, 462
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	111, 415, 435
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	417
BspMI	ACCTGC	1 cut(s)	101
BspPI	GGATC	3 cut(s)	106, 410, 423
BspTNI	GGTCTC	2 cut(s)	197, 462
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	111, 415, 435
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	196, 325
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	3 cut(s)	114, 418, 438
BstMAI	GTCTC	2 cut(s)	197, 462
BstMBI	GATC	3 cut(s)	111, 415, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstSFI	CTRYAG	2 cut(s)	121, 319
BstV1I	GCAGC	2 cut(s)	90, 98
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	142, 295, 478
Csp6I	GTAC	2 cut(s)	193, 496
CviQI	GTAC	2 cut(s)	193, 496
DdeI	CTNAG	2 cut(s)	196, 325
DpnI	GATC	3 cut(s)	113, 417, 437
DpnII	GATC	3 cut(s)	111, 415, 435
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	312
Eco31I	GGTCTC	2 cut(s)	197, 462
Eco47I	GGWCC	3 cut(s)	142, 295, 478
Eco47III	AGCGCT	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaiI	YATR	5 cut(s)	70, 164, 387, 396, 464
FaqI	GGGAC	1 cut(s)	570
Fnu4HI	GCNGC	3 cut(s)	84, 87, 104
Fsp4HI	GCNGC	3 cut(s)	84, 87, 104
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	3 cut(s)	84, 87, 104
GsaI	CCCAGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	1 cut(s)	419
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	5, 217
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	3 cut(s)	298, 340, 478
Hpy188I	TCNGA	4 cut(s)	64, 111, 328, 370
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	3 cut(s)	298, 340, 478
HpyAV	CCTTC	1 cut(s)	542
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	1 cut(s)	487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
HpyF3I	CTNAG	2 cut(s)	196, 325
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	111, 415, 435
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	8 cut(s)	32, 106, 109, 129, 206, 220, 424, 432
Lsp1109I	GCAGC	2 cut(s)	90, 98
MaeI	CTAG	1 cut(s)	405
MalI	GATC	3 cut(s)	113, 417, 437
MboI	GATC	3 cut(s)	111, 415, 435
MboII	GAAGA	2 cut(s)	70, 167
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	409
MlyI	GAGTC	1 cut(s)	211
MseI	TTAA	1 cut(s)	598
MspI	CCGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	529
NdeII	GATC	3 cut(s)	111, 415, 435
NlaIV	GGNNCC	1 cut(s)	417
PaqCI	CACCTGC	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	85, 88, 105
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	3 cut(s)	142, 295, 478
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	194, 497
RsaNI	GTAC	2 cut(s)	193, 496
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	3 cut(s)	84, 87, 104
Sau3AI	GATC	3 cut(s)	111, 415, 435
Sau96I	GGNCC	3 cut(s)	142, 295, 478
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	8 cut(s)	27, 69, 95, 105, 144, 279, 303, 326
SfcI	CTRYAG	2 cut(s)	121, 319
SinI	GGWCC	3 cut(s)	142, 295, 478
Sse9I	AATT	1 cut(s)	409
SseBI	AGGCCT	1 cut(s)	312
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	2 cut(s)	138, 249
TasI	AATT	1 cut(s)	409
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	2 cut(s)	86, 103
TspRI	CASTG	1 cut(s)	339
Van91I	CCANNNNNTGG	1 cut(s)	213
VpaK11BI	GGWCC	3 cut(s)	142, 295, 478
XapI	RAATTY	1 cut(s)	409
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.