Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007330

Physical Location & Seq

Genomic Coordinates Forward (+)

9706685 .. 9707070

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1092000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTGCATAGTGCCCTCAACTCTGCTCTCACCGGCTAGTTTTACTAGTCTTTGTGTGATTGTGGACCATTTGCATTTCCAGGACAATGGGTTTTTGCTTAGGATTTTGTTGATTTCGCTTTTGTGTTTGGAGGAAGGGAATGACTTGATTGGTAGGCTTGACAATGGGTTTTTGCTTGGGATTTTGTTGATTTCGCTTTTGTGTTTGGAGGAAGGGAATGACTTGATTGGTGGGCTTGTTTTGTCTGTGTTATTGTACTTTAAGCATTTGTTTGCGGTCGTGGCACCAGTTTTTTTGTTTTTTTTTGTTTACCTGTTGAGGCATTATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

111

Amino Acids

12.3

Weight (kDa)

5.01

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	15 - 51	2.8e-06	ALG6, ALG8 glycosyltransferase family
Alg6_Alg8	PF03155	55 - 110	2.1e-10	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44660
fragaria_vesca	FvH4_7g08900 FvH4_7g08900
malus_domestica	MD00G1174500.v1.1 MD02G1223000.v1.1 MD07G1091800.v1.1 MD07G1092000.v1.1 MD07G1092500.v1.1
prunus_persica	Prupe.2G117600_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1
pyrus_communis	pycom07g07510 pycom07g07520 pycom07g07570
rosa_chinensis	RchiOBHm_Chr1g0344321
rosa_laevigata	RLG00000028908
rosa_multiflora	Rmu_sc0002198.1_g000003
rosa_roxburghii	Rroxscaffold_4G00309900
rosa_rugosa	Rorug01G0173200
rosa_samantha	Rh1AG189300 Rh1BG155900 Rh1CG174900 Rh1DG187400
rosa_wichuraiana	Rw1G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AciI	CCGC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	257
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	80
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	2 cut(s)	36, 45
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	98
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	256
CviJI	RGCY	3 cut(s)	35, 157, 235
CviKI_1	RGCY	3 cut(s)	35, 157, 235
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	78
FaiI	YATR	1 cut(s)	8
FspBI	CTAG	2 cut(s)	36, 45
HapII	CCGG	1 cut(s)	32
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	64, 310
Hpy8I	GTNNAC	2 cut(s)	64, 310
HpyAV	CCTTC	2 cut(s)	128, 206
HpyCH4V	TGCA	2 cut(s)	6, 73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	98
LpnPI	CCDG	5 cut(s)	45, 65, 92, 300, 326
MaeI	CTAG	2 cut(s)	36, 45
MhlI	GDGCHC	1 cut(s)	15
MnlI	CCTC	4 cut(s)	25, 124, 202, 312
MseI	TTAA	2 cut(s)	261, 331
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	285
PfoI	TCCNGGA	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	261, 331
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	1 cut(s)	315
SinI	GGWCC	1 cut(s)	64
SpeI	ACTAGT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	36, 45
StyD4I	CCNGG	1 cut(s)	78
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	261, 331
Tru9I	TTAA	2 cut(s)	261, 331
VpaK11BI	GGWCC	1 cut(s)	64
XspI	CTAG	2 cut(s)	36, 45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.