Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007330

Physical Location & Seq

Genomic Coordinates Forward (+)

9839971 .. 9842729

Gene Structure 2759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1092500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCGTCCGAACTTTCGGCCAAAGAGGGACTTGATTTCTTGGAGCCATCCACTGCCATCGTTGATTACAAGATGTGTTGCCTATGCATATACTTGTGGGTTTATGTTTGGGTGGCACTTTCATGAGAAGGCATCACTCCACTTTGTCTCTTGCCATTGTTGCAGTGCAGATGTTTTCTATGCAGTTTCCTGCGACTCGCTGTTCCCACTTCTACATGAAGCGCTTCAGGAGTATCCAGTAAAGGTTTTATTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

86

Amino Acids

9.85

Weight (kDa)

7.67

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	14 - 84	6.6e-08	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44660
fragaria_vesca	FvH4_7g08900 FvH4_7g08900
malus_domestica	MD00G1174500.v1.1 MD02G1223000.v1.1 MD07G1091800.v1.1 MD07G1092000.v1.1 MD07G1092500.v1.1
prunus_persica	Prupe.2G117600_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1
pyrus_communis	pycom07g07510 pycom07g07520 pycom07g07570
rosa_chinensis	RchiOBHm_Chr1g0344321
rosa_laevigata	RLG00000028908
rosa_multiflora	Rmu_sc0002198.1_g000003
rosa_roxburghii	Rroxscaffold_4G00309900
rosa_rugosa	Rorug01G0173200
rosa_samantha	Rh1AG189300 Rh1BG155900 Rh1CG174900 Rh1DG187400
rosa_wichuraiana	Rw1G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	209
AfeI	AGCGCT	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	151
Aor51HI	AGCGCT	1 cut(s)	222
AoxI	GGCC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	54, 64
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	44
BmsI	GCATC	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	254
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	2 cut(s)	50, 169
BtsIMutI	CAGTG	2 cut(s)	50, 169
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	223
CviAII	CATG	2 cut(s)	122, 215
CviJI	RGCY	2 cut(s)	19, 45
CviKI_1	RGCY	2 cut(s)	19, 45
EaeI	YGGCCR	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	88
FaeI	CATG	2 cut(s)	125, 218
FaiI	YATR	7 cut(s)	84, 88, 90, 104, 123, 180, 216
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	2 cut(s)	121, 214
FokI	GGATG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	125, 218
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	122, 227
HpyAV	CCTTC	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	86, 162, 167, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	125, 218
HspAI	GCGC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	3 cut(s)	202, 212, 249
LweI	GCATC	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	125, 218
NlaIV	GGNNCC	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	88
PagI	TCATGA	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	120
SchI	GAGTC	1 cut(s)	188
SetI	ASST	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	120
TscAI	CASTG	2 cut(s)	57, 169
TspDTI	ATGAA	2 cut(s)	110, 231
TspRI	CASTG	2 cut(s)	57, 169
XmnI	GAANNNNTTC	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.