Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007330

Physical Location & Seq

Genomic Coordinates Forward (+)

6823420 .. 6823689

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCCGATGCAAGTCTTGTCCAAAAGGGGCTTGCAGAGTTCACCCACAAGCTCAACTCAGCGTCGACTGACTTGTAGAAAGCTGAAGCCCAGATTGGAGTTGATGTGTATTGTGCCCTCAACTCCGCTCTCACTGGCTAGTTTTACTAGTCTTTGTGGGATTGTGGACCATTTGCATTTCCAGTACAATGGATTTTTGCTTGGGATTTTATTGATTTCGTTTTCGTGTTTGGAGGGAGGGAGGGAGGAACTTGATGGGTGGGCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

90

Amino Acids

9.89

Weight (kDa)

8.75

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	53 - 81	2.1e-08	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44660
fragaria_vesca	FvH4_7g08900 FvH4_7g08900
malus_domestica	MD00G1174500.v1.1 MD02G1223000.v1.1 MD07G1091800.v1.1 MD07G1092000.v1.1 MD07G1092500.v1.1
prunus_persica	Prupe.2G117600_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1
pyrus_communis	pycom07g07510 pycom07g07520 pycom07g07570
rosa_chinensis	RchiOBHm_Chr1g0344321
rosa_laevigata	RLG00000028908
rosa_multiflora	Rmu_sc0002198.1_g000003
rosa_roxburghii	Rroxscaffold_4G00309900
rosa_rugosa	Rorug01G0173200
rosa_samantha	Rh1AG189300 Rh1BG155900 Rh1CG174900 Rh1DG187400
rosa_wichuraiana	Rw1G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	185
AhlI	ACTAGT	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	2 cut(s)	51, 82
AluI	AGCT	2 cut(s)	51, 82
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	117
BccI	CCATC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	138, 147
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	2 cut(s)	138, 181
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	2 cut(s)	138, 181
BseSI	GKGCMC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	70
BsrBI	CCGCTC	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	138, 181
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	6 cut(s)	30, 51, 82, 88, 137, 263
CviKI_1	RGCY	6 cut(s)	30, 51, 82, 88, 137, 263
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	64
FspBI	CTAG	2 cut(s)	138, 147
HgaI	GACGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	3 cut(s)	41, 65, 166
Hpy8I	GTNNAC	3 cut(s)	41, 65, 166
Hpy99I	CGWCG	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	10, 34, 175
HpyF3I	CTNAG	1 cut(s)	57
LpnPI	CCDG	3 cut(s)	103, 119, 194
MaeI	CTAG	2 cut(s)	138, 147
MbiI	CCGCTC	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	127, 226, 230, 234, 238
PspPI	GGNCC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SalI	GTCGAC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	2 cut(s)	53, 84
SinI	GGWCC	1 cut(s)	166
SpeI	ACTAGT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	138, 147
TaqI	TCGA	1 cut(s)	64
TatI	WGTACW	1 cut(s)	183
TscAI	CASTG	1 cut(s)	138
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	2 cut(s)	138, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.