Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007330

Physical Location & Seq

Genomic Coordinates Forward (+)

6873687 .. 6873986

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTGCATAGTGCCCTCAACTCTGCTCTTACCGGCTAGTTTTACTAGTCTTTGTGTGATTGTGGACCATTTGCATTTCCAGGACAATGGGTTTTTGCTTGTGATTTTGTTGATTTCGCTTTTGTGTTTGGAGGAAGGGAGGGACGTGATTGGTGGGCTTGTTTTGTCTGTGTTGTTATGCTTCAAGCATTTTTTTGCGGTCGTGGCACCTGTTTTTTTTTGTTTGCTTGTTGAGGCATTATTGTTAAGGATTGGTGAGGATTTGGAGGAAGAAGCTCTTCACCCCCTGTTAGTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042281 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Alg6_Alg8

Protein Analysis

100

Amino Acids

10.99

Weight (kDa)

4.55

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg6_Alg8	PF03155	14 - 83	1.1e-17	ALG6, ALG8 glycosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44660
fragaria_vesca	FvH4_7g08900 FvH4_7g08900
malus_domestica	MD00G1174500.v1.1 MD02G1223000.v1.1 MD07G1091800.v1.1 MD07G1092000.v1.1 MD07G1092500.v1.1
prunus_persica	Prupe.2G117600_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1 Prupe.2G118200_v2.0.a1
pyrus_communis	pycom07g07510 pycom07g07520 pycom07g07570
rosa_chinensis	RchiOBHm_Chr1g0344321
rosa_laevigata	RLG00000028908
rosa_multiflora	Rmu_sc0002198.1_g000003
rosa_roxburghii	Rroxscaffold_4G00309900
rosa_rugosa	Rorug01G0173200
rosa_samantha	Rh1AG189300 Rh1BG155900 Rh1CG174900 Rh1DG187400
rosa_wichuraiana	Rw1G015580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AciI	CCGC	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	184
AhlI	ACTAGT	1 cut(s)	44
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	266, 272
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	80
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	2 cut(s)	36, 45
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	15
Bsh1285I	CGRYCG	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	282
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	86
BtrI	CACGTC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	64
CviJI	RGCY	3 cut(s)	35, 157, 275
CviKI_1	RGCY	3 cut(s)	35, 157, 275
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	78
FaiI	YATR	3 cut(s)	8, 178, 295
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	155
FspBI	CTAG	2 cut(s)	36, 45
HapII	CCGG	1 cut(s)	32
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	266, 272
Hpy166II	GTNNAC	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	6, 73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	144
LguI	GCTCTTC	1 cut(s)	282
LpnPI	CCDG	4 cut(s)	45, 65, 92, 222
MaeI	CTAG	2 cut(s)	36, 45
MaeII	ACGT	1 cut(s)	144
MboII	GAAGA	2 cut(s)	269, 281
MhlI	GDGCHC	1 cut(s)	15
MnlI	CCTC	6 cut(s)	25, 124, 132, 226, 250, 259
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	245
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	3 cut(s)	147, 211, 277
SinI	GGWCC	1 cut(s)	64
SpeI	ACTAGT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	36, 45
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	2 cut(s)	36, 45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.