Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Forward (+)

40684498 .. 40685814

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1175600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAATGCATTAGTGGCAACGAACATAAACTTTAAGTTTGCTGCTTGGCTTTTGGGATTGGACTTCAAGCTTGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGAGTGTACTATGCCAAAAGACGATGGCAGTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATCAGATATCACCCAGGGCTGATGACATGGAAGACGGCGGTAGTCAACATCCCATACGGGGGTGCCAAAGGGGGTATAGGATGTAATCCAGGGGAGTTGAGTCTTTCCAAACTAGAGCAACTCACCAGAGTTTTCACACAAAAGATGCACGATCTTATCGGAATCCACACCGATGTTCCAGCACCAGATATGGGGATAAGTCCACAGACCATGGCATGGATACTAGACGAATACTCAAAGTTTCATGGCTACTCACCTGCAGTAGTGACTGGAAAACCTATTGTAAGTAAATCATGGAAATGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

171

Amino Acids

18.68

Weight (kDa)

9.15

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 148	1.1e-39	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	420
AciI	CCGC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	6 cut(s)	196, 197, 262, 263, 395, 420
AgsI	TTSAA	2 cut(s)	67, 170
AjnI	CCWGG	2 cut(s)	217, 292
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	3 cut(s)	206, 319, 450
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	2 cut(s)	219, 294
BciVI	GTATCC	1 cut(s)	417
BfaI	CTAG	3 cut(s)	183, 317, 428
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	417
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	219, 294
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	190, 268
BmrFI	CCNGG	2 cut(s)	219, 294
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	4 cut(s)	217, 218, 293, 414
Bsc4I	CCNNNNNNNGG	6 cut(s)	196, 197, 262, 263, 395, 420
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	219, 294
BseDI	CCNNGG	4 cut(s)	217, 218, 293, 414
BseGI	GGATG	2 cut(s)	252, 290
BseLI	CCNNNNNNNGG	6 cut(s)	196, 197, 262, 263, 395, 420
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	266
BslI	CCNNNNNNNGG	6 cut(s)	196, 197, 262, 263, 395, 420
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	190, 268
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	4 cut(s)	217, 218, 293, 414
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	219, 294
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	252, 290
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	219, 294
BstSCI	CCNGG	2 cut(s)	217, 292
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	252, 290
BveI	ACCTGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	7 cut(s)	173, 193, 231, 415, 420, 449, 498
CviJI	RGCY	7 cut(s)	49, 70, 146, 159, 189, 223, 453
CviKI_1	RGCY	7 cut(s)	49, 70, 146, 159, 189, 223, 453
CviQI	GTAC	1 cut(s)	117
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	217, 292
EcoRV	GATATC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	414
EcoT22I	ATGCAT	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	7 cut(s)	176, 196, 234, 418, 423, 452, 501
FatI	CATG	7 cut(s)	172, 192, 230, 414, 419, 448, 497
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	239, 297
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	3 cut(s)	183, 317, 428
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	7 cut(s)	176, 196, 234, 418, 423, 452, 501
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	3 cut(s)	204, 304, 366
HphI	GGTGA	3 cut(s)	206, 319, 450
Hpy166II	GTNNAC	4 cut(s)	83, 117, 250, 407
Hpy188I	TCNGA	2 cut(s)	209, 365
Hpy8I	GTNNAC	4 cut(s)	83, 117, 250, 407
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	8, 352, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
Hsp92II	CATG	7 cut(s)	176, 196, 234, 418, 423, 452, 501
Kzo9I	GATC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	3 cut(s)	183, 317, 428
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	2 cut(s)	179, 194
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	2 cut(s)	33, 511
MslI	CAYNNNNRTG	3 cut(s)	177, 375, 502
MspR9I	CCNGG	2 cut(s)	219, 294
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	219, 294
MwoI	GCNNNNNNNGC	1 cut(s)	14
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	7 cut(s)	176, 196, 234, 418, 423, 452, 501
NlaIV	GGNNCC	2 cut(s)	190, 268
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	469
PasI	CCCWGGG	1 cut(s)	218
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	204, 366
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	217, 292
PspGI	CCWGG	2 cut(s)	217, 292
PspN4I	GGNNCC	2 cut(s)	190, 268
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	466
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	3 cut(s)	177, 375, 502
SaqAI	TTAA	2 cut(s)	33, 511
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	219, 294
SetI	ASST	4 cut(s)	72, 111, 463, 484
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	3 cut(s)	177, 375, 502
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	3 cut(s)	183, 317, 428
StyD4I	CCNGG	2 cut(s)	217, 292
StyI	CCWWGG	1 cut(s)	414
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	204, 366
Tru1I	TTAA	2 cut(s)	33, 511
Tru9I	TTAA	2 cut(s)	33, 511
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	17, 138, 209, 437
Van91I	CCANNNNNTGG	1 cut(s)	420
XspI	CTAG	3 cut(s)	183, 317, 428
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.