Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Reverse (-)

5984589 .. 5986240

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1086200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAATGCATTAGTGGCAACGAACAGAAACTTTAAGTTTGCTGCTCAGCTTTTGGGATTGGACTTCAAGCTTGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGATTGTACTATGCCAAAAGACGATGGCAGTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATCAGATATCACCCAGGGGTTGATCCAGATGTGGTGAATGCTTTGGCGCAGCTGATGACATGGAAGACGGCGGTAGCCAACATCCCATACGGGGGTGCCAAATGGGGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

106

Amino Acids

11.53

Weight (kDa)

9.46

Isoelectric Point (pI)

6.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 105	7.8e-26	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	4 cut(s)	196, 197, 295, 296
AgsI	TTSAA	2 cut(s)	67, 170
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	49, 70, 256
AluI	AGCT	3 cut(s)	49, 70, 256
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	41, 253
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	206, 250
BanI	GGYRCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	28, 265
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	219
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	42, 254
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	2 cut(s)	43, 255
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	190, 301
BmrFI	CCNGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	217, 218
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 197, 295, 296
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	217, 218
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	4 cut(s)	196, 197, 295, 296
BseMII	CTCAG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	28, 265
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	299
BslI	CCNNNNNNNGG	4 cut(s)	196, 197, 295, 296
BsmI	GAATGC	2 cut(s)	10, 247
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	226
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	190, 301
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	217, 218
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	28, 265
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	285
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	3 cut(s)	173, 193, 264
CviJI	RGCY	7 cut(s)	49, 70, 146, 159, 189, 256, 281
CviKI_1	RGCY	7 cut(s)	49, 70, 146, 159, 189, 256, 281
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	217
EcoRV	GATATC	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	3 cut(s)	176, 196, 267
FaiI	YATR	8 cut(s)	89, 122, 174, 194, 265, 292, 314, 316
FatI	CATG	3 cut(s)	172, 192, 263
Fnu4HI	GCNGC	2 cut(s)	42, 254
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	42, 254
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	42, 254
HaeIII	GGCC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	3 cut(s)	176, 196, 267
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	204
HphI	GGTGA	2 cut(s)	206, 250
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	176, 196, 267
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	4 cut(s)	148, 204, 231, 243
Lsp1109I	GCAGC	2 cut(s)	28, 265
MaeI	CTAG	1 cut(s)	183
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	280
MnlI	CCTC	2 cut(s)	179, 194
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	2 cut(s)	10, 247
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	176, 196, 267
NlaIV	GGNNCC	2 cut(s)	190, 301
NsiI	ATGCAT	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	218
PctI	GAATGC	2 cut(s)	10, 247
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	43, 255
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	190, 301
PspPI	GGNCC	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	42, 254
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	4 cut(s)	51, 72, 111, 258
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	217
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseI	GCWGC	2 cut(s)	41, 253
TspDTI	ATGAA	3 cut(s)	17, 138, 209
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.