Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Reverse (-)

7672908 .. 7673804

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1107100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAATGCATTAGTGGCAACGAACAGAAACTTTAAGTTGGCTGCTCGGCTTTTGGGATTGGACTCCAAGCTTGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGAGTGTACTATACCGAAAGACGATGGCAGTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCGTGAAGAAAGGAATCAGATATCACCCAGAGGTATATACATACTTTGTTAAGTTCCACTTCTACGACAAATGTGAATGGTTGTTGATCCGGATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

97

Amino Acids

11.23

Weight (kDa)

9.69

Isoelectric Point (pI)

17.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 80	5e-11	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	279
AclWI	GGATC	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwI	GGATC	1 cut(s)	271
Aor13HI	TCCGGA	1 cut(s)	279
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	279
BseGI	GGATG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	276
BspANI	GGCC	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	271
BssMI	GATC	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	6 cut(s)	41, 49, 70, 146, 159, 189
CviKI_1	RGCY	6 cut(s)	41, 49, 70, 146, 159, 189
CviQI	GTAC	1 cut(s)	117
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	1 cut(s)	176
FaiI	YATR	6 cut(s)	89, 122, 174, 226, 228, 232
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	280
Hin1II	CATG	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	62, 204
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	83, 117
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	2 cut(s)	83, 117
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	2 cut(s)	148, 231
Lsp1109I	GCAGC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	183
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	3 cut(s)	179, 214, 279
Mph1103I	ATGCAT	1 cut(s)	10
MroI	TCCGGA	1 cut(s)	279
MseI	TTAA	2 cut(s)	33, 240
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	33, 240
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	56
SetI	ASST	4 cut(s)	72, 111, 225, 290
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SspMI	CTAG	1 cut(s)	183
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	2 cut(s)	33, 240
Tru9I	TTAA	2 cut(s)	33, 240
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	17, 138
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.