Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Reverse (-)

5969226 .. 5984587

Gene Structure 15362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1086100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCACGATCTTATCGGAATCCACACCGATGTTCCAGCACCAGATATGGGGATGACCATGGCATGGATACTAGACAAATACTCAAAGTTTCATGGCTACTCACCTGCACTAGTGACTGGAAAACCTATTGTTGGAACCCTGATTATGGGAGGAAGAATACGCTTCATTGCCATCTTTAGGAAGTATCTGGGAAAAGAAAAGGGGAAGGAAACAAGAGCCGAAATCAAAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

79

Amino Acids

8.75

Weight (kDa)

9.85

Isoelectric Point (pI)

23.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	63
AfiI	CCNNNNNNNGG	5 cut(s)	47, 63, 131, 145, 177
AhlI	ACTAGT	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	93
BccI	CCATC	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	60
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	2 cut(s)	71, 110
BfuAI	ACCTGC	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 63, 131, 145, 177
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	5 cut(s)	47, 63, 131, 145, 177
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	90
BslI	CCNNNNNNNGG	5 cut(s)	47, 63, 131, 145, 177
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	112
CviAII	CATG	3 cut(s)	58, 63, 92
CviJI	RGCY	2 cut(s)	96, 218
CviKI_1	RGCY	2 cut(s)	96, 218
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	61, 66, 95
FaiI	YATR	5 cut(s)	47, 59, 64, 93, 146
FatI	CATG	3 cut(s)	57, 62, 91
FokI	GGATG	1 cut(s)	64
FspBI	CTAG	2 cut(s)	71, 110
Hin1II	CATG	3 cut(s)	61, 66, 95
HinfI	GANTC	1 cut(s)	18
HphI	GGTGA	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	4, 107
Hsp92II	CATG	3 cut(s)	61, 66, 95
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	6 cut(s)	48, 54, 102, 117, 152, 173
MaeI	CTAG	2 cut(s)	71, 110
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	61, 66, 95
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	112
PaqCI	CACCTGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	7
SetI	ASST	2 cut(s)	106, 127
SmiMI	CAYNNNNRTG	1 cut(s)	27
SpeI	ACTAGT	1 cut(s)	109
SspMI	CTAG	2 cut(s)	71, 110
StyI	CCWWGG	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	80, 154
Van91I	CCANNNNNTGG	1 cut(s)	63
XspI	CTAG	2 cut(s)	71, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.