Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000854

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Forward (+)

9469 .. 10162

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom854g00020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAATGCATTAGTGGCAACGAACAGAAACTTTAAGTTTGCTACTCGGCTTTTGGGATTAGACTCCAAGCTAGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGGCATTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATTAGATATCACCCAGAGGCATATGCATACTTTGTGAATGGTTGTCATATACCAAGACTCACTCCAGATAAGGTGAATGCTTTGGCACAGCTGATGACATGGAAGACGACAGTAGCCAACATCCCATATGGGGGTGCCAAATGGGGTATAAGATGTAATCCAGGGGAGTTGAGTCTTTCCAAACTAGAGCAACTCACCAGAGTTTTCACACAAAAGATACACGATCTTATCAAAATCCACACCGATGTTCCAGCATCAGATATGGGGATAGGTCCACAGGTTGAGCAATATTTCTTTGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

161

Amino Acids

17.96

Weight (kDa)

9.58

Isoelectric Point (pI)

15.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	118
AfiI	CCNNNNNNNGG	4 cut(s)	169, 170, 307, 308
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	70, 268
AluI	AGCT	2 cut(s)	70, 268
AoxI	GGCC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	161, 449
AsuHPI	GGTGA	3 cut(s)	179, 262, 364
AvaII	GGWCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	339
BfaI	CTAG	3 cut(s)	71, 156, 362
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	161, 449
BmiI	GGNNCC	2 cut(s)	163, 313
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 170, 307, 308
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	4 cut(s)	169, 170, 307, 308
BseMII	CTCAG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	311
BslI	CCNNNNNNNGG	4 cut(s)	169, 170, 307, 308
BsmI	GAATGC	2 cut(s)	10, 259
BsnI	GGCC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	400
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	163, 313
BspT107I	GGYRCC	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	161, 449
CviAII	CATG	3 cut(s)	146, 166, 276
CviJI	RGCY	7 cut(s)	49, 70, 119, 132, 162, 268, 293
CviKI_1	RGCY	7 cut(s)	49, 70, 119, 132, 162, 268, 293
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	185
EcoT22I	ATGCAT	2 cut(s)	10, 205
FaeI	CATG	3 cut(s)	149, 169, 279
FatI	CATG	3 cut(s)	145, 165, 275
FauNDI	CATATG	2 cut(s)	199, 304
FokI	GGATG	1 cut(s)	284
FspBI	CTAG	3 cut(s)	71, 156, 362
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	149, 169, 279
HinfI	GANTC	3 cut(s)	62, 234, 349
HphI	GGTGA	3 cut(s)	179, 262, 364
Hpy166II	GTNNAC	2 cut(s)	83, 452
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	83, 452
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	8, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	477
Hsp92II	CATG	3 cut(s)	149, 169, 279
Kzo9I	GATC	1 cut(s)	400
LpnPI	CCDG	8 cut(s)	121, 204, 255, 324, 351, 388, 440, 441
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	3 cut(s)	71, 156, 362
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	1 cut(s)	292
MluCI	AATT	1 cut(s)	177
MlyI	GAGTC	3 cut(s)	56, 228, 358
MnlI	CCTC	3 cut(s)	152, 167, 187
Mph1103I	ATGCAT	2 cut(s)	10, 205
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	150, 420
MspA1I	CMGCKG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	10, 259
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeI	CATATG	2 cut(s)	199, 304
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	3 cut(s)	149, 169, 279
NlaIV	GGNNCC	2 cut(s)	163, 313
NmeAIII	GCCGAG	1 cut(s)	25
NsiI	ATGCAT	2 cut(s)	10, 205
PctI	GAATGC	2 cut(s)	10, 259
PleI	GAGTC	3 cut(s)	56, 228, 357
PpsI	GAGTC	3 cut(s)	56, 228, 357
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	163, 313
PspPI	GGNCC	2 cut(s)	161, 449
PvuII	CAGCTG	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	150, 420
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	2 cut(s)	161, 449
SchI	GAGTC	3 cut(s)	56, 228, 358
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	5 cut(s)	72, 252, 270, 451, 459
SfaNI	GCATC	1 cut(s)	440
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	150, 420
Sse9I	AATT	1 cut(s)	177
SspI	AATATT	1 cut(s)	467
SspMI	CTAG	3 cut(s)	71, 156, 362
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TspDTI	ATGAA	3 cut(s)	17, 111, 182
VpaK11BI	GGWCC	1 cut(s)	449
XspI	CTAG	3 cut(s)	71, 156, 362
Zsp2I	ATGCAT	2 cut(s)	10, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.