Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Forward (+)

52105037 .. 52105559

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00203420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAACGCTTTAGTAGCAACAAACAGAAATTTTAAGTTGGCCGCTCGATCGTTGGGATTGGACTCGAAGCTTGAACAGAGTTTACTCATACCATTTAGGGAAATCAAAGTCGAGTGCACTATCCCCAAAGATGATGGCAGTTTGGCTTCATACGTTGGCTTCGAATTCAACGTGACCATAGGACGAGCCGGGATCTGCGCCCGAGCAAGTAGAGCATTTGCAAGCATCTGTCTTCCCACAAGATTGGTCACGGCAATCTATTGGAAATTATGGCTCGGACGGAGAGTGTTCGAGCGAGAGGCGGATGAAGTTGGGCCTTCTACTTCATGTTCTAGCCCGGATGAAAAGTCGTACTATGTAGATGAGTGGTCATATTCCCTAGAGCTGGCTAATGAATATACATTTGATGGAGAGGTGAACCAGATGGTTCCTGTCCCGTTGCGAGTTATATGGGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

153

Amino Acids

17.17

Weight (kDa)

5.26

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	44
AciI	CCGC	2 cut(s)	42, 302
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	28, 164
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	74, 169
AluBI	AGCT	2 cut(s)	70, 385
AluI	AGCT	2 cut(s)	70, 385
Alw21I	GWGCWC	1 cut(s)	119
Alw44I	GTGCAC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	2 cut(s)	39, 314
ApaLI	GTGCAC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	28, 164
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	2 cut(s)	190, 338
AsuHPI	GGTGA	1 cut(s)	427
AsuII	TTCGAA	1 cut(s)	162
AvaI	CYCGRG	1 cut(s)	201
BaeGI	GKGCMC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	3 cut(s)	128, 401, 418
BceAI	ACGGC	1 cut(s)	267
BcnI	CCSGG	2 cut(s)	190, 338
BfaI	CTAG	2 cut(s)	333, 380
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	190, 338
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	190, 338
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	162
BpuMI	CCSGG	2 cut(s)	190, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
BseGI	GGATG	2 cut(s)	310, 346
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	41, 316
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	189, 338
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	41, 316
BsoBI	CYCGRG	1 cut(s)	201
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	47, 192
BspACI	CCGC	2 cut(s)	42, 302
BspANI	GGCC	2 cut(s)	41, 316
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	44
BssMI	GATC	2 cut(s)	47, 192
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	223, 387
BstF5I	GGATG	2 cut(s)	310, 346
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	50, 195
BstMBI	GATC	2 cut(s)	47, 192
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 212
BstSCI	CCNGG	2 cut(s)	188, 336
BstSLI	GKGCMC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	41, 316
BtsCI	GGATG	2 cut(s)	310, 346
Cac8I	GCNNGC	2 cut(s)	223, 387
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	327
CviQI	GTAC	1 cut(s)	352
DpnI	GATC	2 cut(s)	49, 194
DpnII	GATC	2 cut(s)	47, 192
EaeI	YGGCCR	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	164
FaeI	CATG	1 cut(s)	330
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	317, 353
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	333, 380
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	41, 316
HapII	CCGG	2 cut(s)	189, 338
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	189, 338
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	3 cut(s)	83, 117, 418
Hpy188I	TCNGA	1 cut(s)	278
Hpy8I	GTNNAC	3 cut(s)	83, 117, 418
HpyAV	CCTTC	1 cut(s)	327
HpyCH4IV	ACGT	2 cut(s)	153, 171
HpyCH4V	TGCA	2 cut(s)	117, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 212
HpySE526I	ACGT	2 cut(s)	153, 171
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	47, 192
LpnPI	CCDG	5 cut(s)	202, 351, 371, 434, 444
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	333, 380
MaeII	ACGT	2 cut(s)	153, 171
MaeIII	GTNAC	2 cut(s)	172, 247
MalI	GATC	2 cut(s)	49, 194
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	2 cut(s)	47, 192
MboII	GAAGA	1 cut(s)	224
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	3 cut(s)	28, 164, 266
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	2 cut(s)	292, 406
MseI	TTAA	1 cut(s)	33
MspI	CCGG	2 cut(s)	189, 338
MspR9I	CCNGG	2 cut(s)	190, 338
MwoI	GCNNNNNNNGC	2 cut(s)	14, 212
NciI	CCSGG	2 cut(s)	190, 338
NdeII	GATC	2 cut(s)	47, 192
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	172, 247
NspV	TTCGAA	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 168
PkrI	GCNGC	1 cut(s)	43
Ple19I	CGATCG	1 cut(s)	50
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
PsuI	RGATCY	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	47, 192
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	190, 338
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	5 cut(s)	72, 156, 174, 387, 417
SfaNI	GCATC	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	162
Sse9I	AATT	3 cut(s)	28, 164, 266
SsiI	CCGC	2 cut(s)	42, 302
SspMI	CTAG	2 cut(s)	333, 380
StyD4I	CCNGG	2 cut(s)	188, 336
TaiI	ACGT	2 cut(s)	156, 174
TaqI	TCGA	5 cut(s)	46, 65, 111, 162, 291
TasI	AATT	3 cut(s)	28, 164, 266
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	2 cut(s)	172, 247
Tsp45I	GTSAC	2 cut(s)	172, 247
TspDTI	ATGAA	6 cut(s)	17, 138, 315, 321, 357, 408
TspGWI	ACGGA	1 cut(s)	295
VneI	GTGCAC	1 cut(s)	115
XapI	RAATTY	2 cut(s)	28, 164
XspI	CTAG	2 cut(s)	333, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.