Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Forward (+)

36809039 .. 36827549

Gene Structure 18511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1237100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACCTGGAAGACTGCTATGGCCGACATTCCATATGGTGGAGCCAAGGGTGGAATCGGATGCACCCCCAGGGACTTAAGTTTGAGCGAGTTGGAGTATCTGACTCGCGTCTTTGCTCAGAAAATCCATGGCCTCATTGGAACTCATACTGATGTTCCCGCACCCGATATGGGCACCAATGTTCAGACCATGGCATGGATGTTGGATGAGTACTCCAAATTTCATAGTCACTCACCAGCTGTTGCACTGATTGCATTAAAAAAAGGTTCCCAGTTAATCAAGTATAGCCGGAAAGGGAAGCCAAAACTTCGTCCATTCAGAATTTCTACTAATTTGAGAAGGTGGTTGTGGTTTTCGTGCAATCGCCGTTATGCAGCTCAGACCATCACGATTCACCATTGTCACCCCATCACTGCCGTCGCGACCACCGCCGCCACATCACCTCTGTCGAAAACACTAAAGCGAAAGGTATGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004352 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010446 GO:0016020 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0030554 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0055114 GO:0071496 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

10.03

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	1 - 73	1.5e-26	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccB7I	CCANNNNNTGG	2 cut(s)	38, 195
AccII	CGCG	2 cut(s)	108, 422
AciI	CCGC	3 cut(s)	159, 429, 432
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	218, 321
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	38, 170, 195
AflII	CTTAAG	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	5, 68
AluBI	AGCT	2 cut(s)	239, 377
AluI	AGCT	2 cut(s)	239, 377
AoxI	GGCC	2 cut(s)	21, 130
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	218, 321
AsuHPI	GGTGA	4 cut(s)	225, 386, 395, 432
BaeGI	GKGCMC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	2 cut(s)	392, 416
BceAI	ACGGC	2 cut(s)	351, 401
BciT130I	CCWGG	2 cut(s)	7, 70
BfrI	CTTAAG	1 cut(s)	76
BisI	GCNGC	2 cut(s)	375, 432
BlsI	GCNGC	2 cut(s)	376, 433
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	7, 70
BmiI	GGNNCC	3 cut(s)	43, 175, 268
BmrFI	CCNGG	2 cut(s)	7, 70
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	45, 68, 69, 127, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 170, 195
Bse1I	ACTGG	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	7, 70
BseDI	CCNNGG	5 cut(s)	45, 68, 69, 127, 189
BseGI	GGATG	3 cut(s)	65, 204, 211
BseLI	CCNNNNNNNGG	3 cut(s)	38, 170, 195
BseMII	CTCAG	2 cut(s)	131, 392
BseNI	ACTGG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	386
Bsh1236I	CGCG	2 cut(s)	108, 422
BshFI	GGCC	2 cut(s)	23, 132
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	38, 170, 195
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	23, 132
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp19I	CCATGG	2 cut(s)	127, 189
Bsp68I	TCGCGA	1 cut(s)	422
BspACI	CCGC	3 cut(s)	159, 429, 432
BspANI	GGCC	2 cut(s)	23, 132
BspCNI	CTCAG	2 cut(s)	130, 391
BspFNI	CGCG	2 cut(s)	108, 422
BspLI	GGNNCC	3 cut(s)	43, 175, 268
BspT107I	GGYRCC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	5 cut(s)	45, 68, 69, 127, 189
BssT1I	CCWWGG	3 cut(s)	45, 127, 189
Bst2UI	CCWGG	2 cut(s)	7, 70
BstAFI	CTTAAG	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	117, 378
BstDSI	CCRYGG	2 cut(s)	127, 189
BstF5I	GGATG	3 cut(s)	65, 204, 211
BstFNI	CGCG	2 cut(s)	108, 422
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 428
BstNI	CCWGG	2 cut(s)	7, 70
BstPAI	GACNNNNGTC	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	5, 68
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	2 cut(s)	108, 422
BstV1I	GCAGC	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	23, 132
BtgI	CCRYGG	2 cut(s)	127, 189
BtsCI	GGATG	3 cut(s)	65, 204, 211
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	245, 411
BtuMI	TCGCGA	1 cut(s)	422
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	3 cut(s)	128, 190, 195
CviJI	RGCY	7 cut(s)	23, 44, 132, 239, 288, 301, 377
CviKI_1	RGCY	7 cut(s)	23, 44, 132, 239, 288, 301, 377
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	117, 378
EaeI	YGGCCR	1 cut(s)	21
Eco130I	CCWWGG	3 cut(s)	45, 127, 189
EcoRII	CCWGG	2 cut(s)	5, 68
EcoT14I	CCWWGG	3 cut(s)	45, 127, 189
ErhI	CCWWGG	3 cut(s)	45, 127, 189
FaeI	CATG	3 cut(s)	131, 193, 198
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	127, 189, 194
FauI	CCCGC	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	375, 432
FokI	GGATG	3 cut(s)	72, 211, 218
Fsp4HI	GCNGC	2 cut(s)	375, 432
GluI	GCNGC	2 cut(s)	375, 432
HaeIII	GGCC	2 cut(s)	23, 132
HapII	CCGG	1 cut(s)	289
HgaI	GACGC	1 cut(s)	97
Hin1II	CATG	3 cut(s)	131, 193, 198
HinfI	GANTC	3 cut(s)	54, 103, 391
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	4 cut(s)	225, 386, 395, 432
Hpy188I	TCNGA	6 cut(s)	59, 102, 120, 186, 320, 381
Hpy188III	TCNNGA	2 cut(s)	388, 421
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	63, 245, 254, 360, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 428
HpyF3I	CTNAG	2 cut(s)	117, 378
Hsp92II	CATG	3 cut(s)	131, 193, 198
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	6 cut(s)	19, 55, 82, 249, 284, 302
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	227, 401
MboII	GAAGA	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	3 cut(s)	218, 321, 331
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	72, 183
MnlI	CCTC	2 cut(s)	143, 453
MseI	TTAA	3 cut(s)	77, 257, 275
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	76
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	2 cut(s)	7, 70
MvaI	CCWGG	2 cut(s)	7, 70
MvnI	CGCG	2 cut(s)	108, 422
MwoI	GCNNNNNNNGC	2 cut(s)	251, 428
NcoI	CCATGG	2 cut(s)	127, 189
NdeI	CATATG	1 cut(s)	34
NlaIII	CATG	3 cut(s)	131, 193, 198
NlaIV	GGNNCC	3 cut(s)	43, 175, 268
NmuCI	GTSAC	2 cut(s)	227, 401
NruI	TCGCGA	1 cut(s)	422
PasI	CCCWGGG	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	54, 391
PflMI	CCANNNNNTGG	2 cut(s)	38, 195
PkrI	GCNGC	2 cut(s)	376, 433
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PshAI	GACNNNNGTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	5, 68
PspGI	CCWGG	2 cut(s)	5, 68
PspN4I	GGNNCC	3 cut(s)	43, 175, 268
PvuII	CAGCTG	1 cut(s)	239
RruI	TCGCGA	1 cut(s)	422
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	77, 257, 275
SatI	GCNGC	2 cut(s)	375, 432
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	7, 70
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	7 cut(s)	8, 241, 268, 344, 379, 445, 471
SfaNI	GCATC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	218, 321, 331
SsiI	CCGC	3 cut(s)	159, 429, 432
StyD4I	CCNGG	2 cut(s)	5, 68
StyI	CCWWGG	3 cut(s)	45, 127, 189
TaqI	TCGA	1 cut(s)	449
TasI	AATT	3 cut(s)	218, 321, 331
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	54, 391
Tru1I	TTAA	3 cut(s)	77, 257, 275
Tru9I	TTAA	3 cut(s)	77, 257, 275
TscAI	CASTG	2 cut(s)	252, 418
TseFI	GTSAC	2 cut(s)	227, 401
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	2 cut(s)	227, 401
TspDTI	ATGAA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	252, 418
Van91I	CCANNNNNTGG	2 cut(s)	38, 195
Vha464I	CTTAAG	1 cut(s)	76
XapI	RAATTY	2 cut(s)	218, 321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.