Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Reverse (-)

5893564 .. 5895476

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1043700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAATGCATTAGTGGCAACGAACAGAAACTTTAAGTTGGCTGCTCGGCTTTTGGGATTGGACTCCAAGCTCGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGAGTGTACTATACCAAAACACAATGGCAGTTTGGCTTCATATGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCGTAAAGAGAGGAATCAGATATCACCCAGAGGTTGATCCGGATGAGGTGAATGCTTTAGCACAGCTGATGACATGGAAGACGGCCGTAGCCAACATCCCATATGGGGGTGTCAAAGGAAGAAGAACAGAGCAACATCGGCGAAGATCTCAAGGGTTTGCGGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

120

Amino Acids

13.38

Weight (kDa)

10.22

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 104	2e-23	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	2 cut(s)	221, 347
AcoI	YGGCCR	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	295, 296
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	2 cut(s)	70, 256
AluI	AGCT	2 cut(s)	70, 256
AlwI	GGATC	2 cut(s)	221, 347
Ama87I	CYCGRG	1 cut(s)	71
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	2 cut(s)	187, 273
ApeKI	GCWGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	206, 250
AvaI	CYCGRG	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	28
BceAI	ACGGC	2 cut(s)	260, 288
BfaI	CTAG	1 cut(s)	183
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	190, 354
BpiI	GAAGAC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 296
BseAI	TCCGGA	1 cut(s)	229
BseGI	GGATG	2 cut(s)	238, 285
BseLI	CCNNNNNNNGG	2 cut(s)	295, 296
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	189, 275
BsiEI	CGRYCG	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	295, 296
BsmI	GAATGC	2 cut(s)	10, 247
BsnI	GGCC	2 cut(s)	189, 275
BsoBI	CYCGRG	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	226, 335, 352
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	2 cut(s)	189, 275
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	190, 354
BspPI	GGATC	2 cut(s)	221, 347
BssMI	GATC	3 cut(s)	226, 335, 352
BstF5I	GGATG	2 cut(s)	238, 285
BstKTI	GATC	3 cut(s)	229, 338, 355
BstMBI	GATC	3 cut(s)	226, 335, 352
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 328
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	335, 352
BstYI	RGATCY	2 cut(s)	335, 352
BstZI	CGGCCG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	189, 275
BtsCI	GGATG	2 cut(s)	238, 285
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	3 cut(s)	173, 264, 357
CviJI	RGCY	9 cut(s)	41, 49, 70, 146, 159, 189, 256, 275, 281
CviKI_1	RGCY	9 cut(s)	41, 49, 70, 146, 159, 189, 256, 275, 281
CviQI	GTAC	1 cut(s)	117
DpnI	GATC	3 cut(s)	228, 337, 354
DpnII	GATC	3 cut(s)	226, 335, 352
EaeI	YGGCCR	1 cut(s)	273
EagI	CGGCCG	1 cut(s)	273
EclXI	CGGCCG	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	3 cut(s)	176, 267, 360
FaiI	YATR	9 cut(s)	89, 122, 151, 153, 174, 265, 292, 294, 358
FatI	CATG	3 cut(s)	172, 263, 356
FauNDI	CATATG	2 cut(s)	151, 292
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	245, 272
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	189, 275
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	3 cut(s)	176, 267, 360
HinfI	GANTC	2 cut(s)	62, 204
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	206, 250
Hpy166II	GTNNAC	2 cut(s)	83, 117
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	73, 230
Hpy8I	GTNNAC	2 cut(s)	83, 117
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 328
Hsp92II	CATG	3 cut(s)	176, 267, 360
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	226, 335, 352
LpnPI	CCDG	3 cut(s)	148, 231, 243
Lsp1109I	GCAGC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	183
MalI	GATC	3 cut(s)	228, 337, 354
MboI	GATC	3 cut(s)	226, 335, 352
MboII	GAAGA	4 cut(s)	280, 321, 324, 345
MflI	RGATCY	2 cut(s)	335, 352
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	179, 194, 214, 229
Mph1103I	ATGCAT	1 cut(s)	10
MroI	TCCGGA	1 cut(s)	229
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	230
Mva1269I	GAATGC	2 cut(s)	10, 247
MwoI	GCNNNNNNNGC	2 cut(s)	14, 328
NdeI	CATATG	2 cut(s)	151, 292
NdeII	GATC	3 cut(s)	226, 335, 352
NlaIII	CATG	3 cut(s)	176, 267, 360
NlaIV	GGNNCC	2 cut(s)	190, 354
NmeAIII	GCCGAG	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	71
PctI	GAATGC	2 cut(s)	10, 247
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	190, 354
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	335, 352
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	226, 335, 352
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	56
SetI	ASST	5 cut(s)	72, 111, 225, 240, 258
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	71, 339
SmoI	CTYRAG	2 cut(s)	71, 339
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	1 cut(s)	183
TaqI	TCGA	1 cut(s)	72
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	17, 138
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.