Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Reverse (-)

40686634 .. 40687605

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1175700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAATCCATTAGTTGAGTGTACTATGCCAAAAGACGATGGCAGTTTGGCTTATTTGTTGGCTTCAGGGTTCAAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATCAGATATCACCCAGGGACCATGGCATGGATACTAGACGAATACTCAAAGTTTCATGGCTACTCACCTGCAGTAGTGACTGGAAAACCTATTGTAAGTAAATCATGGAATGTGCTTAATGGTTTTGCATTGGTTGCTGTTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004352 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010446 GO:0016020 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0030554 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0055114 GO:0071496 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

86

Amino Acids

9.2

Weight (kDa)

8.82

Isoelectric Point (pI)

22.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	5 - 61	2.1e-07	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	3 cut(s)	100, 101, 135
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	92, 126
AsuHPI	GGTGA	2 cut(s)	110, 165
AvaII	GGWCC	1 cut(s)	126
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	87, 143
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	92, 126
BmiI	GGNNCC	2 cut(s)	94, 127
BmrFI	CCNGG	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	121, 122, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 101, 135
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	121, 122, 129
BseLI	CCNNNNNNNGG	3 cut(s)	100, 101, 135
BseNI	ACTGG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	100, 101, 135
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	129
BspANI	GGCC	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	94, 127
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	121, 122, 129
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 251
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	92, 126
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	6 cut(s)	77, 97, 130, 135, 164, 213
CviJI	RGCY	4 cut(s)	50, 62, 93, 168
CviKI_1	RGCY	4 cut(s)	50, 62, 93, 168
CviQI	GTAC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	129
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	6 cut(s)	80, 100, 133, 138, 167, 216
FaiI	YATR	8 cut(s)	26, 78, 98, 131, 136, 165, 214, 256
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	6 cut(s)	76, 96, 129, 134, 163, 212
FspBI	CTAG	2 cut(s)	87, 143
HaeIII	GGCC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	80, 100, 133, 138, 167, 216
HinfI	GANTC	2 cut(s)	4, 108
HphI	GGTGA	2 cut(s)	110, 165
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	179, 236, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 251
Hsp92II	CATG	6 cut(s)	80, 100, 133, 138, 167, 216
LpnPI	CCDG	5 cut(s)	51, 108, 135, 174, 189
MaeI	CTAG	2 cut(s)	87, 143
MaeIII	GTNAC	1 cut(s)	184
MnlI	CCTC	2 cut(s)	83, 98
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	242, 251
NcoI	CCATGG	1 cut(s)	129
NlaIII	CATG	6 cut(s)	80, 100, 133, 138, 167, 216
NlaIV	GGNNCC	2 cut(s)	94, 127
NmuCI	GTSAC	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	184
PasI	CCCWGGG	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	4, 108
PflMI	CCANNNNNTGG	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	94, 127
PspPI	GGNCC	2 cut(s)	92, 126
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	225
Sau96I	GGNCC	2 cut(s)	92, 126
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	2 cut(s)	178, 199
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	81
SspMI	CTAG	2 cut(s)	87, 143
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	129
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	4, 108
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	17, 113, 152
Van91I	CCANNNNNTGG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	126
XspI	CTAG	2 cut(s)	87, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.