Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Forward (+)

6418729 .. 6422303

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1047200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAATGCTCTTGCAGCCACCAACCGTAACTTTCGACATGCAGCTCGCATTCTTGGGCTGGATTACAAGCTTGAGAAAAGCCCTTTGGTTGAGTGTACTATTCCAAAAGATAACGACACTCTTGTTTCCTATGTGGGATTCAGAATCCAGCATGACAATGCTCGTGGCCCGATGAAAGGTGGAATCCGTTACCATCCTGAGCAAGGGCGGAGCCAAGTTGATCCAGATGAAGCGAATGCTTTAGCTCAGCTGATGACATGGGAAACAGCCGTAGTGAACATTCCTTATGGTGGAGCTAAGGGTGGGATTGGCTGCAACCCAAGGGACCTGAGTATCAACAATGGCTTGGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004352 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0010446 GO:0016020 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0030554 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0051716 GO:0055114 GO:0071496 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

119

Amino Acids

12.88

Weight (kDa)

6.82

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	30 - 112	4.8e-25	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	3 cut(s)	176, 203, 290
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	5 cut(s)	44, 70, 245, 250, 296
AluI	AGCT	5 cut(s)	44, 70, 245, 250, 296
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	3 cut(s)	14, 41, 312
AspS9I	GGNCC	2 cut(s)	167, 325
AvaII	GGWCC	1 cut(s)	325
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BauI	CACGAG	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	26, 53, 299
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	254
BisI	GCNGC	3 cut(s)	15, 42, 313
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	3 cut(s)	16, 43, 314
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	167, 325
BmiI	GGNNCC	2 cut(s)	212, 326
Bpu10I	CCTNAGC	2 cut(s)	198, 297
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 203, 290
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	3 cut(s)	176, 203, 290
BseMII	CTCAG	3 cut(s)	189, 260, 320
BseXI	GCAGC	3 cut(s)	26, 53, 299
BshFI	GGCC	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	176, 203, 290
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	3 cut(s)	10, 48, 241
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	220
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	3 cut(s)	190, 259, 321
BspLI	GGNNCC	2 cut(s)	212, 326
BspPI	GGATC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	4 cut(s)	198, 246, 297, 329
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	26, 53, 299
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	167, 325
Csp6I	GTAC	1 cut(s)	96
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	3 cut(s)	38, 152, 258
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	4 cut(s)	198, 246, 297, 329
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	3 cut(s)	41, 155, 261
FaiI	YATR	5 cut(s)	39, 132, 153, 259, 288
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	37, 151, 257
Fnu4HI	GCNGC	3 cut(s)	15, 42, 313
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	15, 42, 313
GluI	GCNGC	3 cut(s)	15, 42, 313
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	41, 155, 261
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	138, 144, 183, 350
Hpy166II	GTNNAC	2 cut(s)	96, 277
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	3 cut(s)	197, 224, 354
Hpy8I	GTNNAC	2 cut(s)	96, 277
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	14, 41, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	4 cut(s)	198, 246, 297, 329
Hsp92II	CATG	3 cut(s)	41, 155, 261
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	210, 293
LpnPI	CCDG	5 cut(s)	44, 161, 210, 237, 341
Lsp1109I	GCAGC	3 cut(s)	26, 53, 299
MaeIII	GTNAC	2 cut(s)	26, 188
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	250
Mva1269I	GAATGC	3 cut(s)	10, 48, 241
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	41, 155, 261
NlaIV	GGNNCC	2 cut(s)	212, 326
NspI	RCATGY	1 cut(s)	41
PctI	GAATGC	3 cut(s)	10, 48, 241
PfeI	GAWTC	4 cut(s)	138, 144, 183, 350
PkrI	GCNGC	3 cut(s)	16, 43, 314
PpuMI	RGGWCCY	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	212, 326
PspPI	GGNCC	2 cut(s)	167, 325
PspPPI	RGGWCCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	156
SatI	GCNGC	3 cut(s)	15, 42, 313
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	167, 325
SetI	ASST	7 cut(s)	46, 72, 181, 247, 252, 298, 330
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SsiI	CCGC	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	34
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	4 cut(s)	138, 144, 183, 350
TseI	GCWGC	3 cut(s)	14, 41, 312
TspDTI	ATGAA	3 cut(s)	17, 188, 243
TspGWI	ACGGA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	201
XceI	RCATGY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.