Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Forward (+)

7427634 .. 7428083

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAATGCATTAGTGGCAACGAACAGAAACTTTAAGTTTGCTACTCGGCTTTTGGGATTAGACTCCAAGCTAGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGAGTGTACTATACCAAAAAACGATGGCATTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATTAGATATCACCCAGAGGCATATGCATACTTTGTGAATGGTTGTCATATACCAAGACTCACTGCCATGAAATTGTCTTTAATTGTTATGGATCCTTTTATGGAAAATGTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

107

Amino Acids

11.93

Weight (kDa)

9.51

Isoelectric Point (pI)

23.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 76	5.5e-11	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	290, 303
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	196, 197
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AlwI	GGATC	2 cut(s)	290, 303
AoxI	GGCC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	295
BccI	CCATC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	71, 183
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	190, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 197
BseLI	CCNNNNNNNGG	2 cut(s)	196, 197
BshFI	GGCC	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	196, 197
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	190, 297
BspPI	GGATC	2 cut(s)	290, 303
BssMI	GATC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	3 cut(s)	173, 193, 271
CviJI	RGCY	5 cut(s)	49, 70, 146, 159, 189
CviKI_1	RGCY	5 cut(s)	49, 70, 146, 159, 189
CviQI	GTAC	1 cut(s)	117
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	212
EcoT22I	ATGCAT	2 cut(s)	10, 232
FaeI	CATG	3 cut(s)	176, 196, 274
FatI	CATG	3 cut(s)	172, 192, 270
FauNDI	CATATG	1 cut(s)	226
FspBI	CTAG	2 cut(s)	71, 183
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	176, 196, 274
HinfI	GANTC	2 cut(s)	62, 261
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	83, 117
Hpy8I	GTNNAC	2 cut(s)	83, 117
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	8, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	176, 196, 274
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	2 cut(s)	148, 231
MaeI	CTAG	2 cut(s)	71, 183
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	3 cut(s)	204, 275, 285
MlyI	GAGTC	2 cut(s)	56, 255
MnlI	CCTC	3 cut(s)	179, 194, 214
Mph1103I	ATGCAT	2 cut(s)	10, 232
MseI	TTAA	2 cut(s)	33, 284
MslI	CAYNNNNRTG	2 cut(s)	177, 269
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	3 cut(s)	176, 196, 274
NlaIV	GGNNCC	2 cut(s)	190, 297
NmeAIII	GCCGAG	1 cut(s)	25
NsiI	ATGCAT	2 cut(s)	10, 232
PctI	GAATGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	56, 255
PpsI	GAGTC	2 cut(s)	56, 255
PspN4I	GGNNCC	2 cut(s)	190, 297
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	2 cut(s)	177, 269
SaqAI	TTAA	2 cut(s)	33, 284
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	2 cut(s)	56, 255
SetI	ASST	3 cut(s)	72, 111, 319
SmiMI	CAYNNNNRTG	2 cut(s)	177, 269
Sse9I	AATT	3 cut(s)	204, 275, 285
SspMI	CTAG	2 cut(s)	71, 183
TasI	AATT	3 cut(s)	204, 275, 285
TatI	WGTACW	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	33, 284
Tru9I	TTAA	2 cut(s)	33, 284
TscAI	CASTG	1 cut(s)	271
TspDTI	ATGAA	4 cut(s)	17, 138, 209, 287
TspRI	CASTG	1 cut(s)	271
XspI	CTAG	2 cut(s)	71, 183
Zsp2I	ATGCAT	2 cut(s)	10, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.