Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015699

Physical Location & Seq

Genomic Coordinates Reverse (-)

28465260 .. 28475358

Gene Structure 10099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1140900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAATCCATTAGTGGCAACGAACATAAACTTTAAGTTTGCTGCTTGGCTTTTGGGATTGGACTTCAAGCTTGAGAAAAGTTTACTTATACCATTTAGGGAAATCAAGGTTGAGTGTACTATGCCAAAAGACGATGGCAGTTTGGCTTCATTTGTTGGCTTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGAATCAGATATCACCCAGGGCTGATGACATGGAAGATGGCGGTAGTCAACATCCCATACGGGGGTGCCAAAGGGGGTATAGGATGTAATCCAGGGGAGTTGAGTCTTTCCAAACTAGAGCAACTCACCAGAGTTTTCACACAAAAGATGCACGATCTTATCGGAATCCACACCGATGTTCCAGCACCAGATATGGGGATAAGTCCACAGACCATGGCATGGATACTAGACGAATACTCAAAGTTTCATGGCTACTCACCTGCAGTAGTGACTGGAAAACCTATTGAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004353 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006807 GO:0006950 GO:0006970 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0010038 GO:0016491 GO:0016638 GO:0016639 GO:0017076 GO:0019222 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0050897 GO:0051171 GO:0051716 GO:0055114 GO:0065007 GO:0071496 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00471 ko00910 ko01100 ko01200 ko04217 ko04964 map00220 map00250 map00471 map00910 map01100 map01200 map04217 map04964

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

165

Amino Acids

18.07

Weight (kDa)

8.54

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog_N	PF02812	33 - 148	1.4e-39	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015699)

Species	Orthologous Gene IDs
malus_domestica	MD00G1113900.v1.1 MD00G1175600.v1.1 MD00G1175700.v1.1 MD04G1241400.v1.1 MD05G1237100.v1.1 MD06G1047200.v1.1 MD06G1140900.v1.1 MD10G1043700.v1.1 MD10G1307200.v1.1 MD13G1107100.v1.1 MD15G1086100.v1.1 MD15G1086200.v1.1
pyrus_communis	pycom15g11030 pycom854g00020
rosa_roxburghii	Rroxscaffold_5G00351190 Rroxscaffold_7G00203420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	420
AciI	CCGC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	6 cut(s)	196, 197, 262, 263, 395, 420
AgsI	TTSAA	3 cut(s)	67, 170, 488
AjnI	CCWGG	2 cut(s)	217, 292
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	3 cut(s)	206, 319, 450
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	128, 232
BciT130I	CCWGG	2 cut(s)	219, 294
BciVI	GTATCC	1 cut(s)	417
BfaI	CTAG	3 cut(s)	183, 317, 428
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	417
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	219, 294
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	190, 268
BmrFI	CCNGG	2 cut(s)	219, 294
BmsI	GCATC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	4 cut(s)	217, 218, 293, 414
Bsc4I	CCNNNNNNNGG	6 cut(s)	196, 197, 262, 263, 395, 420
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	2 cut(s)	219, 294
BseDI	CCNNGG	4 cut(s)	217, 218, 293, 414
BseGI	GGATG	2 cut(s)	252, 290
BseLI	CCNNNNNNNGG	6 cut(s)	196, 197, 262, 263, 395, 420
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	266
BslI	CCNNNNNNNGG	6 cut(s)	196, 197, 262, 263, 395, 420
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	190, 268
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	4 cut(s)	217, 218, 293, 414
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	219, 294
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	252, 290
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstNI	CCWGG	2 cut(s)	219, 294
BstSCI	CCNGG	2 cut(s)	217, 292
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	252, 290
BveI	ACCTGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	6 cut(s)	173, 193, 231, 415, 420, 449
CviJI	RGCY	7 cut(s)	49, 70, 146, 159, 189, 223, 453
CviKI_1	RGCY	7 cut(s)	49, 70, 146, 159, 189, 223, 453
CviQI	GTAC	1 cut(s)	117
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	217, 292
EcoRV	GATATC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	6 cut(s)	176, 196, 234, 418, 423, 452
FatI	CATG	6 cut(s)	172, 192, 230, 414, 419, 448
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	239, 297
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	3 cut(s)	183, 317, 428
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	176, 196, 234, 418, 423, 452
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	4, 204, 304, 366
HphI	GGTGA	3 cut(s)	206, 319, 450
Hpy166II	GTNNAC	4 cut(s)	83, 117, 250, 407
Hpy188I	TCNGA	2 cut(s)	209, 365
Hpy8I	GTNNAC	4 cut(s)	83, 117, 250, 407
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	352, 464
Hsp92II	CATG	6 cut(s)	176, 196, 234, 418, 423, 452
Kzo9I	GATC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	3 cut(s)	183, 317, 428
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	2 cut(s)	179, 194
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	2 cut(s)	177, 375
MspR9I	CCNGG	2 cut(s)	219, 294
MvaI	CCWGG	2 cut(s)	219, 294
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	6 cut(s)	176, 196, 234, 418, 423, 452
NlaIV	GGNNCC	2 cut(s)	190, 268
NmuCI	GTSAC	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	469
PasI	CCCWGGG	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	4, 204, 366
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	217, 292
PspGI	CCWGG	2 cut(s)	217, 292
PspN4I	GGNNCC	2 cut(s)	190, 268
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	466
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	2 cut(s)	177, 375
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	219, 294
SetI	ASST	4 cut(s)	72, 111, 463, 484
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	2 cut(s)	177, 375
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	3 cut(s)	183, 317, 428
StyD4I	CCNGG	2 cut(s)	217, 292
StyI	CCWWGG	1 cut(s)	414
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	4, 204, 366
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	17, 138, 209, 437
Van91I	CCANNNNNTGG	1 cut(s)	420
XspI	CTAG	3 cut(s)	183, 317, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.