Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Forward (+)

8234751 .. 8235379

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1020000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTGTTCTCATTTCATTCGTTACAGAATTTTCGTGTTTACAGCAAGATATAGGCCTCAACTTATCATTTGTTTTGTCATTCCATTCTTTCAACAGTTCACTGGCATCAAAGTCATCATGTTTTATGCTCCACTTCTTTTCAACACCATGGGTTTTGGAGAAGAAGCTTCCCTCATGTCTACAGTCATCACTGGCGGTGTTAACGTCATCGCTACCTTAGTTTCCATGTTGACCGTCGATAGGTTCGGAAGAAGGGCCTTATTCCTTGAAGGTGGTTTGCAGATGATCATTAGCCAGGTTGCTGTTGGAATCATGATTAGCGTAAAGTTTGGTGTTAGCGGAGAAGGATCGTTGACGAAAGACGAAGCCAATTTGCTCTTGTGCTGGATCTGTACGTACGTTGCAGCGTTTGCATGGTCGTGGGGTCCATTGGGGTGGCTGGTGCCGAGTGAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

154

Amino Acids

17.06

Weight (kDa)

8.34

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	12 - 152	2.1e-33	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	2 cut(s)	195, 339
AclWI	GGATC	2 cut(s)	355, 395
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	2 cut(s)	394, 398
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	92, 142, 269
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AlwI	GGATC	2 cut(s)	355, 395
AoxI	GGCC	2 cut(s)	53, 255
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	255, 425
AvaII	GGWCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	255, 425
BmiI	GGNNCC	2 cut(s)	426, 444
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	106, 196
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	106, 196
BseXI	GCAGC	1 cut(s)	416
BshFI	GGCC	2 cut(s)	55, 257
BshNI	GGYRCC	1 cut(s)	442
BsiWI	CGTACG	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	240
BsnI	GGCC	2 cut(s)	55, 257
Bsp143I	GATC	3 cut(s)	285, 347, 387
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	2 cut(s)	195, 339
BspANI	GGCC	2 cut(s)	55, 257
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	426, 444
BspPI	GGATC	2 cut(s)	355, 395
BspT107I	GGYRCC	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	106, 196
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	285, 347, 387
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	3 cut(s)	96, 184, 235
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	147
BstKTI	GATC	3 cut(s)	288, 350, 390
BstMBI	GATC	3 cut(s)	285, 347, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	180
BstSNI	TACGTA	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	55, 257
BtgI	CCRYGG	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	99, 189
CciI	TCATGA	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	255, 425
Csp6I	GTAC	2 cut(s)	393, 397
CviAII	CATG	6 cut(s)	118, 148, 175, 226, 313, 414
CviJI	RGCY	6 cut(s)	55, 167, 257, 294, 368, 439
CviKI_1	RGCY	6 cut(s)	55, 167, 257, 294, 368, 439
CviQI	GTAC	2 cut(s)	393, 397
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	3 cut(s)	287, 349, 389
DpnII	GATC	3 cut(s)	285, 347, 387
Eco105I	TACGTA	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	6 cut(s)	121, 151, 178, 229, 316, 417
FaiI	YATR	9 cut(s)	51, 119, 126, 149, 176, 227, 314, 415, 457
FatI	CATG	6 cut(s)	117, 147, 174, 225, 312, 413
FbaI	TGATCA	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	405
GluI	GCNGC	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	55, 257
Hin1II	CATG	6 cut(s)	121, 151, 178, 229, 316, 417
HincII	GTYRAC	3 cut(s)	202, 231, 354
HindII	GTYRAC	3 cut(s)	202, 231, 354
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	309
HpaI	GTTAAC	1 cut(s)	202
Hpy166II	GTNNAC	6 cut(s)	39, 99, 180, 202, 231, 354
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	6 cut(s)	39, 99, 180, 202, 231, 354
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	246, 263, 338
HpyCH4III	ACNGT	3 cut(s)	96, 184, 235
HpyCH4IV	ACGT	3 cut(s)	204, 395, 399
HpyCH4V	TGCA	3 cut(s)	280, 404, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	3 cut(s)	204, 395, 399
Hsp92II	CATG	6 cut(s)	121, 151, 178, 229, 316, 417
Ksp22I	TGATCA	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	285, 347, 387
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	87, 177, 281, 308, 370, 425
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	114
MaeII	ACGT	3 cut(s)	204, 395, 399
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	287, 349, 389
MboI	GATC	3 cut(s)	285, 347, 387
MboII	GAAGA	2 cut(s)	173, 261
MflI	RGATCY	1 cut(s)	387
MluCI	AATT	2 cut(s)	27, 370
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	3 cut(s)	66, 182, 445
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	418, 433
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	3 cut(s)	285, 347, 387
NlaIII	CATG	6 cut(s)	121, 151, 178, 229, 316, 417
NlaIV	GGNNCC	2 cut(s)	426, 444
PagI	TCATGA	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	309
Pfl23II	CGTACG	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspLI	CGTACG	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	426, 444
PspPI	GGNCC	2 cut(s)	255, 425
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	394, 398
RsaNI	GTAC	2 cut(s)	393, 397
RseI	CAYNNNNRTG	2 cut(s)	418, 433
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	3 cut(s)	285, 347, 387
Sau96I	GGNCC	2 cut(s)	255, 425
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	9 cut(s)	169, 207, 218, 245, 274, 300, 398, 402, 456
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	418, 433
SnaBI	TACGTA	1 cut(s)	396
Sse9I	AATT	2 cut(s)	27, 370
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	195, 339
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	96, 184, 235
TaiI	ACGT	3 cut(s)	207, 398, 402
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	27, 370
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	106, 196
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	106, 196
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.