Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Forward (+)

42328355 .. 42328804

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGAGTTGATGCTTCCCTCATTTCTGCAGTCATCACTGGCACCGTTAATACCATCGCTACCTTGGTTTCAATCGCCACAGTTGATACGATTGGAAGAAGAGAACTGTTCCTCGAAGGTGGTGTGCAAATGATCATTTGTCAGATCGCTGTTGCCATCATGATTGCATTGAAGTTTGGCTTCCGTGGAGAAGGATCATTGGCAAAAGGCAAAGCCGATTTTCTCCTGTTCTTGATCTGTGCATACGTAGCGGGATTTGCATGGTCTTGGGGTCTGTTGGGGTGGTTGGTGCCTAGTGAGATATGTCCTCTGGAAATCCGATCAGCTGGACAGGCCATCAATGTCTCGGTTAACATGTTATTCACTTTTATTATTGGCCAAGGCTTCCTCACCATGCTCTGCAAAATGAAGTTTGTGTTTAAGGAAAAGAGATTCGAGAGAGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

149

Amino Acids

16.25

Weight (kDa)

8.42

Isoelectric Point (pI)

21.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 139	4.7e-30	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 289
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	72, 172
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	2 cut(s)	333, 376
AsuHPI	GGTGA	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	2 cut(s)	41, 289
BccI	CCATC	3 cut(s)	62, 164, 344
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	43, 291
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	3 cut(s)	63, 184, 379
Bse1I	ACTGG	1 cut(s)	43
BseDI	CCNNGG	3 cut(s)	63, 184, 379
BseNI	ACTGG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	335, 378
BshNI	GGYRCC	2 cut(s)	41, 289
BsmAI	GTCTC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	335, 378
Bsp143I	GATC	5 cut(s)	132, 144, 194, 234, 320
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	2 cut(s)	335, 378
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	43, 291
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	202
BspT107I	GGYRCC	2 cut(s)	41, 289
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	63, 184, 379
BssMI	GATC	5 cut(s)	132, 144, 194, 234, 320
BssT1I	CCWWGG	2 cut(s)	63, 379
Bst4CI	ACNGT	3 cut(s)	46, 82, 108
Bst6I	CTCTTC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	184
BstKTI	GATC	5 cut(s)	135, 147, 197, 237, 323
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	5 cut(s)	132, 144, 194, 234, 320
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 257, 332
BstNSI	RCATGY	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	27
BstSNI	TACGTA	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	335, 378
BtgI	CCRYGG	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	159
CviAII	CATG	4 cut(s)	160, 261, 355, 394
CviJI	RGCY	6 cut(s)	180, 215, 326, 335, 378, 384
CviKI_1	RGCY	6 cut(s)	180, 215, 326, 335, 378, 384
DpnI	GATC	5 cut(s)	134, 146, 196, 236, 322
DpnII	GATC	5 cut(s)	132, 144, 194, 234, 320
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	247
Eco130I	CCWWGG	2 cut(s)	63, 379
EcoT14I	CCWWGG	2 cut(s)	63, 379
ErhI	CCWWGG	2 cut(s)	63, 379
FaeI	CATG	4 cut(s)	163, 264, 358, 397
FaiI	YATR	6 cut(s)	161, 244, 262, 304, 356, 395
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	4 cut(s)	159, 260, 354, 393
FauI	CCCGC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	132
FspBI	CTAG	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	335, 378
Hin1II	CATG	4 cut(s)	163, 264, 358, 397
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	432
HpaI	GTTAAC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	144, 320
Hpy188III	TCNNGA	4 cut(s)	160, 232, 311, 436
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	110, 185
HpyCH4III	ACNGT	3 cut(s)	46, 82, 108
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	6 cut(s)	29, 127, 167, 242, 260, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 257, 332
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	163, 264, 358, 397
Ksp22I	TGATCA	1 cut(s)	132
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	132, 144, 194, 234, 320
LpnPI	CCDG	5 cut(s)	24, 239, 296, 312, 317
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	246
MalI	GATC	5 cut(s)	134, 146, 196, 236, 322
MboI	GATC	5 cut(s)	132, 144, 194, 234, 320
MboII	GAAGA	2 cut(s)	108, 111
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	1 cut(s)	443
MluNI	TGGCCA	1 cut(s)	378
MnlI	CCTC	4 cut(s)	29, 122, 318, 398
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	3 cut(s)	48, 351, 420
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	248, 257, 332
NdeII	GATC	5 cut(s)	132, 144, 194, 234, 320
NlaIII	CATG	4 cut(s)	163, 264, 358, 397
NlaIV	GGNNCC	2 cut(s)	43, 291
NspI	RCATGY	1 cut(s)	358
PagI	TCATGA	1 cut(s)	159
PciI	ACATGT	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	432
Ppu21I	YACGTR	1 cut(s)	247
PscI	ACATGT	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	43, 291
PstI	CTGCAG	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	48, 351, 420
Sau3AI	GATC	5 cut(s)	132, 144, 194, 234, 320
SetI	ASST	4 cut(s)	65, 121, 249, 328
SfcI	CTRYAG	1 cut(s)	27
SnaBI	TACGTA	1 cut(s)	247
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	63, 379
TaaI	ACNGT	3 cut(s)	46, 82, 108
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	114, 435
TasI	AATT	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	3 cut(s)	48, 351, 420
Tru9I	TTAA	3 cut(s)	48, 351, 420
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	43
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.