Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000410.1

Orthogroup ID

OG0015711

Physical Location & Seq

Genomic Coordinates Forward (+)

115090 .. 115746

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000410.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgttctatgctcctgtgttgttcaacacaattggtttcggaagtgatgcttctctcatatcggctgtgatcaccggacttgttaatgttgctgcaacaattgtttcgatgtatggtgttgataagtggggaaggaggaagctcttccttgagggtggaactcaaatgttgatatgccagatagttgtggcggcttgtattggtgcaaaatttggattggatggaaatgctgataacttgccaaagtggtatgcaattgttgtggtagttttcatctgcacatatgtagcagggtttgcttggtcatggggtcctctagggtggctagtccctagtgaaatcttccccttggaaatccgatccgctgctcagagtgtcaatgtctcagttaacatgatcttcaccttcattgtggctcaagtcttcttgacaatgttgtgccacttgaaattcgggctcttcatcttcttcgcattcttcgtgtgtgtcatgtccattttcgtgtacttgttcttgcccgagacaaaggggatcccaattgaagagatgagcagggtgtggaagcagcattggtactggaagagatatgttaccgaagaagattaccccaacgatggttatgagatgagcaagccaacaattgtcaacattgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

218

Amino Acids

24.58

Weight (kDa)

6.1

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015711)

Species	Orthologous Gene IDs
malus_domestica	MD01G1020000.v1.1
pyrus_communis	pycom05g30040 pycom10g25660 pycom16g20450
rosa_chinensis	RchiOBHm_Chr2g0127511
rosa_multiflora	Rmu_co7967344.1_g000001 Rmu_co8024056.1_g000001 Rmu_sc0000410.1_g000021 Rmu_sc0002811.1_g000008 Rmu_sc0008562.1_g000007
rosa_rugosa	Rorug02G0274000
rosa_samantha	Rh2CG313400 Rh2DG352800 Rh6AG095400 Rh6CG082500 Rh6DG078200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	191, 363
AclWI	GGATC	3 cut(s)	354, 526, 539
AcsI	RAATTY	2 cut(s)	209, 449
AfaI	GTAC	2 cut(s)	506, 575
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	25, 448, 542
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	2 cut(s)	388, 515
AlwI	GGATC	3 cut(s)	354, 526, 539
Ama87I	CYCGRG	1 cut(s)	518
ApeKI	GCWGC	3 cut(s)	92, 365, 565
ApoI	RAATTY	2 cut(s)	209, 449
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	64, 394
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	79, 352, 577
BccI	CCATC	2 cut(s)	215, 608
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	388, 515
BfaI	CTAG	3 cut(s)	317, 326, 333
BisI	GCNGC	4 cut(s)	93, 192, 366, 566
BlsI	GCNGC	4 cut(s)	94, 193, 367, 567
Bme18I	GGWCC	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	2 cut(s)	312, 533
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	415
BpuEI	CTTGAG	2 cut(s)	170, 402
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMII	CTCAG	2 cut(s)	383, 399
BseNI	ACTGG	1 cut(s)	581
BseXI	GCAGC	3 cut(s)	79, 352, 577
BsgI	GTGCAG	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	2 cut(s)	388, 515
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	4 cut(s)	69, 359, 396, 531
BspACI	CCGC	2 cut(s)	191, 363
BspCNI	CTCAG	2 cut(s)	382, 398
BspLI	GGNNCC	2 cut(s)	312, 533
BspPI	GGATC	3 cut(s)	354, 526, 539
BspQI	GCTCTTC	2 cut(s)	149, 464
BsrI	ACTGG	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	4 cut(s)	69, 359, 396, 531
BssT1I	CCWWGG	1 cut(s)	348
Bst6I	CTCTTC	4 cut(s)	149, 464, 537, 575
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	632
BstDEI	CTNAG	2 cut(s)	369, 385
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	4 cut(s)	72, 362, 399, 534
BstMAI	GTCTC	2 cut(s)	388, 515
BstMBI	GATC	4 cut(s)	69, 359, 396, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	79, 352, 577
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	505, 574
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	3 cut(s)	306, 394, 490
CviJI	RGCY	7 cut(s)	65, 142, 194, 325, 416, 457, 634
CviKI_1	RGCY	7 cut(s)	65, 142, 194, 325, 416, 457, 634
CviQI	GTAC	2 cut(s)	505, 574
DdeI	CTNAG	2 cut(s)	369, 385
DpnI	GATC	4 cut(s)	71, 361, 398, 533
DpnII	GATC	4 cut(s)	69, 359, 396, 531
Eam1104I	CTCTTC	4 cut(s)	149, 464, 537, 575
EarI	CTCTTC	4 cut(s)	149, 464, 537, 575
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	309, 397, 493
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	3 cut(s)	305, 393, 489
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	93, 192, 366, 566
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	4 cut(s)	93, 192, 366, 566
FspBI	CTAG	3 cut(s)	317, 326, 333
GluI	GCNGC	4 cut(s)	93, 192, 366, 566
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	3 cut(s)	309, 397, 493
HincII	GTYRAC	2 cut(s)	391, 646
HindII	GTYRAC	2 cut(s)	391, 646
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	64, 394
Hpy166II	GTNNAC	3 cut(s)	391, 505, 646
Hpy188I	TCNGA	3 cut(s)	41, 359, 372
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	3 cut(s)	391, 505, 646
HpyAV	CCTTC	2 cut(s)	126, 415
HpyCH4V	TGCA	4 cut(s)	95, 206, 254, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	369, 385
Hsp92II	CATG	3 cut(s)	309, 397, 493
Ksp22I	TGATCA	1 cut(s)	69
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	69, 359, 396, 531
LguI	GCTCTTC	2 cut(s)	149, 464
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	6 cut(s)	27, 88, 191, 276, 538, 562
Lsp1109I	GCAGC	3 cut(s)	79, 352, 577
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	3 cut(s)	317, 326, 333
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	4 cut(s)	71, 361, 398, 533
MboI	GATC	4 cut(s)	69, 359, 396, 531
MfeI	CAATTG	5 cut(s)	30, 99, 255, 537, 639
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	7 cut(s)	30, 99, 209, 255, 449, 537, 639
MnlI	CCTC	3 cut(s)	129, 145, 324
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	84, 390
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	1 cut(s)	75
MunI	CAATTG	5 cut(s)	30, 99, 255, 537, 639
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	4 cut(s)	69, 359, 396, 531
NlaIII	CATG	3 cut(s)	309, 397, 493
NlaIV	GGNNCC	2 cut(s)	312, 533
PciSI	GCTCTTC	2 cut(s)	149, 464
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	94, 193, 367, 567
PpuMI	RGGWCCY	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	312, 533
PspPI	GGNCC	1 cut(s)	311
PspPPI	RGGWCCY	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	2 cut(s)	506, 575
RsaNI	GTAC	2 cut(s)	505, 574
RseI	CAYNNNNRTG	1 cut(s)	500
SapI	GCTCTTC	2 cut(s)	149, 464
SaqAI	TTAA	2 cut(s)	84, 390
SatI	GCNGC	4 cut(s)	93, 192, 366, 566
Sau3AI	GATC	4 cut(s)	69, 359, 396, 531
Sau96I	GGNCC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	459
SetI	ASST	2 cut(s)	144, 407
SfaNI	GCATC	1 cut(s)	37
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	149, 417
SmoI	CTYRAG	2 cut(s)	149, 417
Sse9I	AATT	7 cut(s)	30, 99, 209, 255, 449, 537, 639
SsiI	CCGC	2 cut(s)	191, 363
SspMI	CTAG	3 cut(s)	317, 326, 333
StyI	CCWWGG	1 cut(s)	348
TaqI	TCGA	1 cut(s)	107
TasI	AATT	7 cut(s)	30, 99, 209, 255, 449, 537, 639
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	84, 390
Tru9I	TTAA	2 cut(s)	84, 390
TseI	GCWGC	3 cut(s)	92, 365, 565
TspDTI	ATGAA	3 cut(s)	262, 397, 451
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	2 cut(s)	209, 449
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	3 cut(s)	317, 326, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.