Rorug02G0274000
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
29321262 .. 29327373
6112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0274000.1

Sequence Viewer

Length: 900 bp
ATGAGTGTCTCAGATCTGCCAAAGAAGGAGGTAAATGTACTTAAAGGGCATGAGGGAGCAGTATTAGCAGCAAGGTTCAATAAAGACGGAAATTACTGCCTCAGCTGCGGGAAAGACCGAACCATCCGACTCTGGAACCCTCACCGTGGCATCCACATTAAGACATACAAGTCCCATGGCCGTGAAGTCCGAGATGTCCATGTCACCTCGGACAACTCCAAATTATGTTCAGGTGGTGGCGACAGACAAATCTTCTATTGGGATGTGGCATCCGGTCGAGTCATTCGAAAATTTCGGGGCCATGATGGAGGGGTGAATGCTGTGAAGTTCAATGAGTATGCATCTGTTGTAGTCTCAGCAGGATATGATCAGTCATTGCGTGCTTGGGACTGCAGGTCTCAGAGTACTGAGCCAATTCAGATAATTGACTCGTTTACAGATAGTGTAATGTCTGTTTGTTTAACAAAGACTGAGATAATTGGTGGAAGTGTTGATGGAACTGTTCGAACATTTGACATTCGTATGGGAAGAGAGCTATCCGATGACTTGGGACAACCTGTGAACTGTATCTCAATGTCAAATGATGGTAACTGCATATTAGCAAGCTGCTTAGATTCAACTATACGACTCCTCGACAGGTCTTCCGCTGAATTACTTCAAGAATACAAAGGCCATACTTGTAAGTCTTACAAATTGGACTGCTGCCTTACCAACACTGATGCCCATGTAATCGGAGGATCTGAGGATGGTTCAATTTTCTTCTGGGATCTAGTAGATGCATCTGTTGTGTCAAGTATCCGAGCACATTCGTCAGTGGTTACAAGTGTCAGTTATCACCCAAAGGACAACTGCATGGTTAGTTCTTCTGTAGATGGCACTATTAAGGTGTGGAAGACTTGA

Protein Analysis

299

Amino Acids

32.85

Weight (kDa)

6.78

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 8 - 184 1e-14 WDR55
WD40 PF00400 9 - 46 8.9e-10 WD domain, G-beta repeat
WD40_Prp19 PF24814 9 - 68 3.3e-07 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 10 - 84 5.5e-13 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 10 - 97 2.8e-09 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 10 - 131 2.9e-13 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 10 - 96 2e-13 THOC3 beta-propeller domain
Beta-prop_EML PF23409 11 - 158 1.3e-07 Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta PF25391 13 - 152 1e-12 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 13 - 130 1.3e-15 WDR3 second beta-propeller domain
EIF3I PF24805 13 - 225 1.9e-24 EIF3I
Beta-prop_WDR5 PF25175 14 - 298 3.2e-66 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 15 - 146 4.1e-12 WDR36/Utp21 second beta-propeller domain
Beta-prop_SCAP PF24017 37 - 133 6.1e-07 SCAP Beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 41 - 129 2.3e-06 WDR36/Utp21 first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 52 - 135 4.9e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_SPT8 PF23798 53 - 111 7.1e-06 SPT8 beta propeller
WD40_CDC20-Fz PF24807 53 - 135 2.2e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR41 PF25178 53 - 155 2.6e-06 WDR41
Beta-prop_WDR3_1st PF25173 54 - 173 2.8e-19 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 59 - 299 7.2e-32 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 61 - 172 1.7e-10 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 62 - 137 1.4e-08 WDHD1 first WD40 domain
WD40_Prp19 PF24814 70 - 197 8.4e-17 Prp19 WD40 domain
WD40 PF00400 93 - 130 1.6e-06 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 97 - 184 6.9e-07 TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 97 - 257 2.1e-07 MABP1/WDR62 second WD40 domain
Beta-prop_EML_2 PF23414 112 - 229 6.9e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 147 - 265 4.6e-08 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 155 - 292 4.1e-10 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 155 - 298 1.2e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 159 - 297 1.4e-12 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 184 - 298 6.6e-12 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 185 - 298 8.6e-10 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 185 - 298 1.9e-18 WDR3 first beta-propeller domain
WDR55 PF24796 186 - 298 1.5e-11 WDR55
WD40_Prp19 PF24814 187 - 297 9.3e-17 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 187 - 298 4e-12 WDR3 second beta-propeller domain
Beta-prop_ACSF4 PF13570 191 - 296 2.7e-07 Beta-alanine-activating enzyme, beta-propeller
WD40_MABP1-WDR62_2nd PF24782 192 - 298 2e-08 MABP1/WDR62 second WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 223 - 298 2.1e-06 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 235 - 298 2e-10 WDHD1 first WD40 domain
WD40 PF00400 262 - 297 3.3e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 169
Acc36I ACCTGC 1 cut(s) 384
AciI CCGC 2 cut(s) 108, 645
AclWI GGATC 2 cut(s) 745, 774
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 2 cut(s) 39, 406
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 5 cut(s) 79, 331, 618, 659, 753
AhdI GACNNNNNGTC 1 cut(s) 394
AluBI AGCT 3 cut(s) 105, 535, 606
AluI AGCT 3 cut(s) 105, 535, 606
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 3 cut(s) 13, 358, 402
AlwI GGATC 2 cut(s) 745, 774
AoxI GGCC 3 cut(s) 178, 298, 670
ApeKI GCWGC 4 cut(s) 68, 105, 606, 702
ApoI RAATTY 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 4 cut(s) 134, 196, 325, 827
AsuII TTCGAA 2 cut(s) 286, 505
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 805
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 4 cut(s) 80, 92, 593, 689
BccI CCATC 6 cut(s) 131, 299, 488, 578, 740, 866
BceAI ACGGC 1 cut(s) 165
BciVI GTATCC 1 cut(s) 806
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 3 cut(s) 13, 358, 402
BfaI CTAG 1 cut(s) 770
BfmI CTRYAG 2 cut(s) 391, 867
BfuAI ACCTGC 1 cut(s) 384
BfuI GTATCC 1 cut(s) 806
BglII AGATCT 1 cut(s) 13
BisI GCNGC 4 cut(s) 69, 106, 607, 703
BlsI GCNGC 4 cut(s) 70, 107, 608, 704
BmcAI AGTACT 1 cut(s) 406
BmeRI GACNNNNNGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 137, 299
BmsI GCATC 6 cut(s) 159, 278, 350, 709, 766, 788
BpiI GAAGAC 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 2 cut(s) 286, 505
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 145, 175, 207
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 374
BseDI CCNNGG 3 cut(s) 145, 175, 207
BseGI GGATG 5 cut(s) 123, 150, 268, 269, 751
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 7 cut(s) 24, 115, 369, 399, 413, 462, 732
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 4 cut(s) 80, 92, 593, 689
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 3 cut(s) 180, 300, 672
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 3 cut(s) 157, 401, 564
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 3 cut(s) 13, 358, 402
BsmFI GGGAC 3 cut(s) 157, 401, 564
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 3 cut(s) 180, 300, 672
Bso31I GGTCTC 1 cut(s) 402
Bsp119I TTCGAA 2 cut(s) 286, 505
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 4 cut(s) 13, 367, 737, 766
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 2 cut(s) 108, 645
BspANI GGCC 3 cut(s) 180, 300, 672
BspCNI CTCAG 7 cut(s) 23, 114, 368, 400, 412, 463, 733
BspLI GGNNCC 2 cut(s) 137, 299
BspMAI CTGCAG 1 cut(s) 395
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 2 cut(s) 745, 774
BspT104I TTCGAA 2 cut(s) 286, 505
BspTNI GGTCTC 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 145, 175, 207
BssMI GATC 4 cut(s) 13, 367, 737, 766
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 3 cut(s) 146, 502, 566
Bst6I CTCTTC 1 cut(s) 523
BstBI TTCGAA 2 cut(s) 286, 505
BstC8I GCNNGC 2 cut(s) 381, 604
BstDEI CTNAG 8 cut(s) 10, 101, 355, 399, 408, 471, 610, 741
BstDSI CCRYGG 2 cut(s) 145, 175
BstF5I GGATG 5 cut(s) 123, 150, 268, 269, 751
BstKTI GATC 4 cut(s) 16, 370, 740, 769
BstMAI GTCTC 3 cut(s) 13, 358, 402
BstMBI GATC 4 cut(s) 13, 367, 737, 766
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 65, 105
BstSFI CTRYAG 2 cut(s) 391, 867
BstV1I GCAGC 4 cut(s) 80, 92, 593, 689
BstV2I GAAGAC 1 cut(s) 633
BstX2I RGATCY 3 cut(s) 13, 737, 766
BstYI RGATCY 3 cut(s) 13, 737, 766
BsuI GTATCC 1 cut(s) 806
BsuRI GGCC 3 cut(s) 180, 300, 672
BtgI CCRYGG 2 cut(s) 145, 175
BtsCI GGATG 5 cut(s) 123, 150, 268, 269, 751
BtsIMutI CAGTG 2 cut(s) 714, 819
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 381, 604
Cfr13I GGNCC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 38, 405
CviAII CATG 6 cut(s) 50, 176, 200, 302, 725, 853
CviJI RGCY 7 cut(s) 105, 180, 300, 412, 535, 606, 672
CviKI_1 RGCY 7 cut(s) 105, 180, 300, 412, 535, 606, 672
CviQI GTAC 2 cut(s) 38, 405
DdeI CTNAG 8 cut(s) 10, 101, 355, 399, 408, 471, 610, 741
DpnI GATC 4 cut(s) 15, 369, 739, 768
DpnII GATC 4 cut(s) 13, 367, 737, 766
DrdI GACNNNNNNGTC 1 cut(s) 169
DriI GACNNNNNGTC 1 cut(s) 394
DseDI GACNNNNNNGTC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 523
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 175
EcoT22I ATGCAT 2 cut(s) 343, 781
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 6 cut(s) 53, 179, 203, 305, 728, 856
FaqI GGGAC 3 cut(s) 157, 401, 564
FatI CATG 6 cut(s) 49, 175, 199, 301, 724, 852
FauI CCCGC 1 cut(s) 101
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 4 cut(s) 69, 106, 607, 703
FokI GGATG 5 cut(s) 110, 137, 256, 275, 758
Fsp4HI GCNGC 4 cut(s) 69, 106, 607, 703
FspBI CTAG 1 cut(s) 770
GluI GCNGC 4 cut(s) 69, 106, 607, 703
HaeIII GGCC 3 cut(s) 180, 300, 672
HapII CCGG 1 cut(s) 273
Hin1II CATG 6 cut(s) 53, 179, 203, 305, 728, 856
HinfI GANTC 5 cut(s) 129, 279, 428, 614, 627
HpaII CCGG 1 cut(s) 273
HphI GGTGA 4 cut(s) 134, 196, 325, 827
Hpy166II GTNNAC 2 cut(s) 435, 562
Hpy188III TCNNGA 2 cut(s) 133, 659
Hpy8I GTNNAC 2 cut(s) 435, 562
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 146, 502, 566
HpyCH4V TGCA 5 cut(s) 341, 393, 594, 779, 852
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 105
HpyF3I CTNAG 8 cut(s) 10, 101, 355, 399, 408, 471, 610, 741
Hsp92II CATG 6 cut(s) 53, 179, 203, 305, 728, 856
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 4 cut(s) 13, 367, 737, 766
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 118, 216, 286, 345, 379, 570, 622, 748
Lsp1109I GCAGC 4 cut(s) 80, 92, 593, 689
LweI GCATC 6 cut(s) 159, 278, 350, 709, 766, 788
MaeI CTAG 1 cut(s) 770
MaeIII GTNAC 3 cut(s) 202, 587, 817
MalI GATC 4 cut(s) 15, 369, 739, 768
MboI GATC 4 cut(s) 13, 367, 737, 766
MboII GAAGA 5 cut(s) 244, 540, 633, 751, 855
MflI RGATCY 3 cut(s) 13, 737, 766
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 9 cut(s) 91, 221, 290, 414, 423, 477, 650, 692, 753
MlyI GAGTC 4 cut(s) 123, 288, 422, 621
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 9 cut(s) 22, 46, 110, 150, 217, 302, 641, 728, 736
Mph1103I ATGCAT 2 cut(s) 343, 781
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 4 cut(s) 42, 159, 461, 882
MslI CAYNNNNRTG 2 cut(s) 180, 521
MspA1I CMGCKG 2 cut(s) 105, 647
MspI CCGG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 65, 105
NcoI CCATGG 1 cut(s) 175
NdeII GATC 4 cut(s) 13, 367, 737, 766
NlaIII CATG 6 cut(s) 53, 179, 203, 305, 728, 856
NlaIV GGNNCC 2 cut(s) 137, 299
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 2 cut(s) 343, 781
NspV TTCGAA 2 cut(s) 286, 505
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PctI GAATGC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 1 cut(s) 614
PkrI GCNGC 4 cut(s) 70, 107, 608, 704
PleI GAGTC 4 cut(s) 123, 287, 422, 621
PpsI GAGTC 4 cut(s) 123, 287, 422, 621
PspN4I GGNNCC 2 cut(s) 137, 299
PspPI GGNCC 1 cut(s) 298
PstI CTGCAG 1 cut(s) 395
PsuI RGATCY 3 cut(s) 13, 737, 766
PvuII CAGCTG 1 cut(s) 105
RsaI GTAC 2 cut(s) 39, 406
RsaNI GTAC 2 cut(s) 38, 405
RseI CAYNNNNRTG 2 cut(s) 180, 521
SaqAI TTAA 4 cut(s) 42, 159, 461, 882
SatI GCNGC 4 cut(s) 69, 106, 607, 703
Sau3AI GATC 4 cut(s) 13, 367, 737, 766
Sau96I GGNCC 1 cut(s) 298
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 4 cut(s) 123, 288, 422, 621
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 6 cut(s) 159, 278, 350, 709, 766, 788
SfcI CTRYAG 2 cut(s) 391, 867
SfuI TTCGAA 2 cut(s) 286, 505
SmiMI CAYNNNNRTG 2 cut(s) 180, 521
Sse9I AATT 9 cut(s) 91, 221, 290, 414, 423, 477, 650, 692, 753
SsiI CCGC 2 cut(s) 108, 645
SspMI CTAG 1 cut(s) 770
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 146, 502, 566
TaqI TCGA 4 cut(s) 277, 286, 505, 633
TaqII GACCGA 1 cut(s) 132
TasI AATT 9 cut(s) 91, 221, 290, 414, 423, 477, 650, 692, 753
TatI WGTACW 2 cut(s) 37, 404
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 4 cut(s) 42, 159, 461, 882
Tru9I TTAA 4 cut(s) 42, 159, 461, 882
TscAI CASTG 2 cut(s) 721, 819
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 4 cut(s) 68, 105, 606, 702
Tsp45I GTSAC 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 2 cut(s) 721, 819
XapI RAATTY 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 1 cut(s) 770
ZrmI AGTACT 1 cut(s) 406
Zsp2I ATGCAT 2 cut(s) 343, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.