RchiOBHm_Chr7g0191851

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010609
Physical Location & Seq
Reverse (-)
10496509 .. 10496974
466 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17144

Sequence Viewer

Length: 339 bp
ATGAAAGTACTAAAGGGCTATGTTCGCAATCGTTTTCATCCTGAGGGTTGCATAGCTGAGAGCTATCTTGGAGAAGAATCTGTTGAGTTTTGCTCGGAGTTTTTACAACAATGTAGTTCAGTTGGTGTTCCTAAGGGTCCATCTAAGCTCTCTGGCCCACTTTCGGGTGCGAAGCTGAAGTCAATAGATGAAGAAGTCAGAGACCAGGCACATCTTCATGTGTTGTTCAATAATGCTGAGGTGGATCCATATAGAAAGGCACATAAGGAGATTGTGGAGCAGCTTTGGGGAGGGAAGAAGAAGAGCAAAAAGTGGCTACAAAGTGTCCGCAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

112

Amino Acids

12.69

Weight (kDa)

9.2

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4218 PF13960 2 - 40 9.2e-11 Domain of unknown function (DUF4218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 328
AclWI GGATC 2 cut(s) 239, 252
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 163, 164
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 5 cut(s) 56, 63, 148, 175, 283
AluI AGCT 5 cut(s) 56, 63, 148, 175, 283
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 2 cut(s) 239, 252
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 280
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 2 cut(s) 137, 155
AvaII GGWCC 1 cut(s) 137
AxyI CCTNAGG 2 cut(s) 42, 132
BamHI GGATCC 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 195
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 137, 155
BmiI GGNNCC 2 cut(s) 138, 246
BmrFI CCNGG 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 164
Bse21I CCTNAGG 2 cut(s) 42, 132
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 163, 164
BseMII CTCAG 3 cut(s) 33, 48, 228
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 163, 164
BsmAI GTCTC 1 cut(s) 195
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 3 cut(s) 34, 49, 229
BspLI GGNNCC 2 cut(s) 138, 246
BspPI GGATC 2 cut(s) 239, 252
BspQI GCTCTTC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 195
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 296
BstDEI CTNAG 5 cut(s) 42, 57, 132, 144, 237
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu36I CCTNAGG 2 cut(s) 42, 132
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 137, 155
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 218
CviJI RGCY 8 cut(s) 18, 56, 63, 148, 156, 175, 283, 316
CviKI_1 RGCY 8 cut(s) 18, 56, 63, 148, 156, 175, 283, 316
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 5 cut(s) 42, 57, 132, 144, 237
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 197
Eco81I CCTNAGG 2 cut(s) 42, 132
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 221
FaiI YATR 6 cut(s) 21, 53, 219, 250, 252, 264
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 281
HaeIII GGCC 1 cut(s) 156
Hin1II CATG 1 cut(s) 221
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 97, 200
Hpy188III TCNNGA 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 5 cut(s) 42, 57, 132, 144, 237
Hsp92II CATG 1 cut(s) 221
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 4 cut(s) 54, 138, 191, 218
Lsp1109I GCAGC 1 cut(s) 292
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 6 cut(s) 86, 203, 206, 307, 310, 313
MflI RGATCY 1 cut(s) 244
MnlI CCTC 3 cut(s) 37, 232, 284
MseI TTAA 1 cut(s) 337
MslI CAYNNNNRTG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 2 cut(s) 138, 246
PciSI GCTCTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 138, 246
PspPI GGNCC 2 cut(s) 137, 155
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 137, 155
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 206
SetI ASST 6 cut(s) 58, 65, 150, 177, 243, 285
SgeI CNNG 8 cut(s) 53, 80, 106, 165, 177, 217, 218, 230
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 216
SsiI CCGC 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 204
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 4 cut(s) 17, 26, 204, 206
VpaK11BI GGWCC 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.