Rh5CG532400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010609
Physical Location & Seq
Reverse (-)
74552018 .. 74553098
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG532400.1

Sequence Viewer

Length: 336 bp
ATGGAGTTTTGCTCCGAGTTTGTTCAACGTTGTAATACAATTGGAGTTCCTAAGGATCAAAGTAAGCTCTGTGGCCCACTTTCTACTGCGAAACTTAAGTGCATTGATGAGAAGGAGAGAGATCAGCCACATCTTCATGTGTTGTCCAATAATGATGAGGTGGATCCATATAAGATTGCACATAAAAACATTGTAGAGCAGCTGTATGCTGGGAAGAAGAAGAGTAAACAATGGCTCCTTAGTGAGCACAATCGTACTTTTGCTGATTGGTTTGAAGCCAAGAAATACCTTCGCCTTGTGATGAAGAGGAGAATGAGCCTGATGCCACTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

111

Amino Acids

13.05

Weight (kDa)

9.23

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 28
AclWI GGATC 3 cut(s) 63, 158, 171
AfaI GTAC 1 cut(s) 256
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 26, 275
AluBI AGCT 2 cut(s) 67, 202
AluI AGCT 2 cut(s) 67, 202
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 3 cut(s) 63, 158, 171
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 51
BamHI GGATCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 211
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 165, 236
BmsI GCATC 1 cut(s) 312
BplI GAGNNNNNCTC 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bse21I CCTNAGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 322
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 249
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 55, 121, 163
BspANI GGCC 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 165, 236
BspPI GGATC 3 cut(s) 63, 158, 171
BspTI CTTAAG 1 cut(s) 95
BssMI GATC 3 cut(s) 55, 121, 163
Bst6I CTCTTC 2 cut(s) 215, 299
BstAFI CTTAAG 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 51, 239
BstKTI GATC 3 cut(s) 58, 124, 166
BstMBI GATC 3 cut(s) 55, 121, 163
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 137, 333
CviJI RGCY 7 cut(s) 67, 75, 127, 202, 235, 278, 318
CviKI_1 RGCY 7 cut(s) 67, 75, 127, 202, 235, 278, 318
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 51, 239
DpnI GATC 3 cut(s) 57, 123, 165
DpnII GATC 3 cut(s) 55, 121, 163
Eam1104I CTCTTC 2 cut(s) 215, 299
EarI CTCTTC 2 cut(s) 215, 299
Eco81I CCTNAGG 1 cut(s) 51
FaeI CATG 2 cut(s) 140, 336
FaiI YATR 6 cut(s) 138, 169, 171, 183, 207, 334
FatI CATG 2 cut(s) 136, 332
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 2 cut(s) 140, 336
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 106, 299
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 102, 179
HpyF3I CTNAG 2 cut(s) 51, 239
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 2 cut(s) 140, 336
Kzo9I GATC 3 cut(s) 55, 121, 163
LmnI GCTCC 2 cut(s) 17, 240
LpnPI CCDG 2 cut(s) 195, 332
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 312
MaeII ACGT 1 cut(s) 28
MalI GATC 3 cut(s) 57, 123, 165
MboI GATC 3 cut(s) 55, 121, 163
MboII GAAGA 5 cut(s) 125, 226, 229, 232, 316
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 39
MnlI CCTC 2 cut(s) 151, 300
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 2 cut(s) 135, 331
MspA1I CMGCKG 1 cut(s) 202
MspCI CTTAAG 1 cut(s) 95
MunI CAATTG 1 cut(s) 39
NdeII GATC 3 cut(s) 55, 121, 163
NlaIII CATG 2 cut(s) 140, 336
NlaIV GGNNCC 2 cut(s) 165, 236
PkrI GCNGC 1 cut(s) 201
Psp1406I AACGTT 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 165, 236
PspPI GGNCC 1 cut(s) 74
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 2 cut(s) 135, 331
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 55, 121, 163
Sau96I GGNCC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 249
SetI ASST 5 cut(s) 31, 69, 162, 204, 291
SfaNI GCATC 1 cut(s) 312
SgeI CNNG 6 cut(s) 28, 149, 222, 292, 308, 331
SmiMI CAYNNNNRTG 2 cut(s) 135, 331
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 39
TaiI ACGT 1 cut(s) 31
TasI AATT 1 cut(s) 39
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 125, 317
Vha464I CTTAAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.