Rh2BG228500

transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010609
Physical Location & Seq
Reverse (-)
22373758 .. 22382202
8445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG228500.1

Sequence Viewer

Length: 348 bp
ATGTTGATGATACCAAGTTGGTTGGAAGGAGCAGCAGGTTGTATAGCCGAGAGTTATGTTGGAGAAGAATGTGTGGAGTTTTGCTCTGAGTTTGTTCACCATTGTGATCCAATTGGAGTTCCTAAGGATTCAAGTAAGTTGTGTGGACCACTTTCTATTGCAAAACTAAAGTCCATAGATGAGAAAGAGAGAGACCAGGCACATCTTCATGTCCTATCCAATAATGCTGAAGTGGATCCGTATAAGAAAATCATGAATGAAGATGAGAAAATGAATGGAAAGCCCCAATTTTTGGATGATATATATGAGAAATGTATTTCTAGATCTTTTCCAACCACCAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

115

Amino Acids

12.85

Weight (kDa)

4.88

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 292
AclWI GGATC 3 cut(s) 101, 230, 243
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 1 cut(s) 132
AjnI CCWGG 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 3 cut(s) 101, 230, 243
ApeKI GCWGC 2 cut(s) 32, 342
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 123
BamHI GGATCC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 321, 346
BfuAI ACCTGC 1 cut(s) 26
BglII AGATCT 1 cut(s) 323
BisI GCNGC 2 cut(s) 33, 343
BlsI GCNGC 2 cut(s) 34, 344
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BsaI GGTCTC 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse21I CCTNAGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 186
Bsp143I GATC 3 cut(s) 106, 235, 323
BspCNI CTCAG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 3 cut(s) 101, 230, 243
BspTNI GGTCTC 1 cut(s) 186
BssMI GATC 3 cut(s) 106, 235, 323
Bst2UI CCWGG 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 87, 123
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 3 cut(s) 109, 238, 326
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 3 cut(s) 106, 235, 323
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 44
BstX2I RGATCY 2 cut(s) 235, 323
BstYI RGATCY 2 cut(s) 235, 323
Bsu36I CCTNAGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 2 cut(s) 209, 253
CviJI RGCY 3 cut(s) 47, 283, 345
CviKI_1 RGCY 3 cut(s) 47, 283, 345
DdeI CTNAG 2 cut(s) 87, 123
DpnI GATC 3 cut(s) 108, 237, 325
DpnII GATC 3 cut(s) 106, 235, 323
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 212, 256
FaiI YATR 9 cut(s) 44, 57, 176, 210, 243, 254, 302, 304, 306
FatI CATG 2 cut(s) 208, 252
Fnu4HI GCNGC 2 cut(s) 33, 343
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 33, 343
FspBI CTAG 2 cut(s) 321, 346
GluI GCNGC 2 cut(s) 33, 343
Hin1II CATG 2 cut(s) 212, 256
HinfI GANTC 1 cut(s) 128
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 97, 146
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 253, 321
Hpy8I GTNNAC 2 cut(s) 97, 146
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 87, 123
Hsp92II CATG 2 cut(s) 212, 256
Kzo9I GATC 3 cut(s) 106, 235, 323
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 3 cut(s) 21, 182, 209
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 2 cut(s) 321, 346
MalI GATC 3 cut(s) 108, 237, 325
MboI GATC 3 cut(s) 106, 235, 323
MboII GAAGA 3 cut(s) 77, 197, 272
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 2 cut(s) 235, 323
MluCI AATT 2 cut(s) 111, 287
MmeI TCCRAC 1 cut(s) 40
MslI CAYNNNNRTG 2 cut(s) 102, 207
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 197
NdeII GATC 3 cut(s) 106, 235, 323
NlaIII CATG 2 cut(s) 212, 256
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 102
PagI TCATGA 1 cut(s) 252
PfeI GAWTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 2 cut(s) 34, 344
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 2 cut(s) 235, 323
RseI CAYNNNNRTG 2 cut(s) 102, 207
SatI GCNGC 2 cut(s) 33, 343
Sau3AI GATC 3 cut(s) 106, 235, 323
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 197
SetI ASST 2 cut(s) 40, 347
SgeI CNNG 9 cut(s) 27, 48, 61, 144, 208, 209, 221, 265, 333
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 102, 207
Sse9I AATT 2 cut(s) 111, 287
SspMI CTAG 2 cut(s) 321, 346
StyD4I CCNGG 1 cut(s) 195
TasI AATT 2 cut(s) 111, 287
TfiI GAWTC 1 cut(s) 128
TseI GCWGC 2 cut(s) 32, 342
TspDTI ATGAA 4 cut(s) 197, 269, 273, 287
TspGWI ACGGA 1 cut(s) 228
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 146
XbaI TCTAGA 1 cut(s) 320
XspI CTAG 2 cut(s) 321, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.