Rh5BG251600

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010609
Physical Location & Seq
Reverse (-)
31010770 .. 31017897
7128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG251600.1

Sequence Viewer

Length: 354 bp
ATGGAGTTTTGCTCCGAGTTTGTTCAACGTTGTAATCCAATTGGAGTTCCTAAGGATCAAAGTAAGCTCTGTGGCCCACTTTCTACTGCGAAACTTAAGTGCATTGATGAGAAGGAGAGAGATCAGGCACATCTTCATGTGTTGTCCAATAATGATGAGGTGGATCCATATAAGATTGCACATAAAAACATTGTAGAGCAACTGTATGCTGGGAAGAAGAAGAGTAAACAATGGCTCCTTAGTGAGCACAATCGTACTTTTGCTGATTGGTTTGAAGCCAAGGATTTGGAGACGAGCTTCAATCCTAGTGCAAGCGAGCAGACTTGTAGGATTGTAGCGTGGTCGCGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

117

Amino Acids

13.47

Weight (kDa)

6.89

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 346
AciI CCGC 1 cut(s) 346
AclI AACGTT 1 cut(s) 28
AclWI GGATC 3 cut(s) 63, 158, 171
AfaI GTAC 1 cut(s) 256
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 26, 275, 301
AluBI AGCT 2 cut(s) 67, 297
AluI AGCT 2 cut(s) 67, 297
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 3 cut(s) 63, 158, 171
AoxI GGCC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 51
BamHI GGATCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 306
BfrI CTTAAG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 165, 236
BplI GAGNNNNNCTC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bse21I CCTNAGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 284
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 55, 121, 163
BspACI CCGC 1 cut(s) 346
BspANI GGCC 1 cut(s) 75
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 165, 236
BspPI GGATC 3 cut(s) 63, 158, 171
BspTI CTTAAG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 3 cut(s) 55, 121, 163
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 204
Bst6I CTCTTC 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 313, 317
BstDEI CTNAG 2 cut(s) 51, 239
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 3 cut(s) 58, 124, 166
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 3 cut(s) 55, 121, 163
BstUI CGCG 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 163
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 313, 317
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 137
CviJI RGCY 5 cut(s) 67, 75, 235, 278, 297
CviKI_1 RGCY 5 cut(s) 67, 75, 235, 278, 297
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 51, 239
DpnI GATC 3 cut(s) 57, 123, 165
DpnII GATC 3 cut(s) 55, 121, 163
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 138, 169, 171, 183, 207
FatI CATG 1 cut(s) 136
FspBI CTAG 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 102, 179, 311
HpyF3I CTNAG 2 cut(s) 51, 239
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 3 cut(s) 55, 121, 163
LmnI GCTCC 2 cut(s) 17, 240
LpnPI CCDG 2 cut(s) 110, 195
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 28
MalI GATC 3 cut(s) 57, 123, 165
MboI GATC 3 cut(s) 55, 121, 163
MboII GAAGA 4 cut(s) 125, 226, 229, 232
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 39
MnlI CCTC 1 cut(s) 151
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 95
MunI CAATTG 1 cut(s) 39
MvnI CGCG 1 cut(s) 346
NdeII GATC 3 cut(s) 55, 121, 163
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 2 cut(s) 165, 236
Psp1406I AACGTT 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 165, 236
PspPI GGNCC 1 cut(s) 74
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 3 cut(s) 55, 121, 163
Sau96I GGNCC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 249
SetI ASST 4 cut(s) 31, 69, 162, 299
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 39
SsiI CCGC 1 cut(s) 346
SspMI CTAG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 204
TaiI ACGT 1 cut(s) 31
TasI AATT 1 cut(s) 39
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 125
Vha464I CTTAAG 1 cut(s) 95
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.