Rh1DG069000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0010609
Physical Location & Seq
Reverse (-)
12230201 .. 12238697
8497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG069000.1

Sequence Viewer

Length: 360 bp
ATGGCGAAGACCAGCCACACTTTCTTCTCGAACAGCATCTTCGTCTTCTTCTTCTTCTTCAACGGCGCCGGCAAGCTCGTGAGTAAAGGTTTCAGTTATGATCCTCCATTAGCCCTTAAACAGGGCTTACTAAAGTATTGTCGTGTATATTTCGCTTTGTGTTGGGGCAGCTGGAAAGTTGGGCTTTACCTCATGAAAACCAAAAAATATACTCATGAGCATTGTTTTCCTTTGTTGGTTTCAATGAGACTGGATTATAGTGTTCATAATAGACTTCATGAGAATGTTTTGCACTATTTCAACTACTATGTAGTAGAGTTACAATTGCCCTCCGTAAAAATTTCAGACTTTAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

14.04

Weight (kDa)

9.49

Isoelectric Point (pI)

19.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 3 cut(s) 61, 243, 301
AluBI AGCT 2 cut(s) 76, 171
AluI AGCT 2 cut(s) 76, 171
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 65
BauI CACGAG 1 cut(s) 77
BbsI GAAGAC 2 cut(s) 14, 37
BbvI GCAGC 1 cut(s) 180
BceAI ACGGC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 2 cut(s) 14, 37
BsaHI GRCGYC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 100
BspHI TCATGA 3 cut(s) 192, 214, 277
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 70, 74
BstENI CCTNNNNNAGG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 14, 37
Cac8I GCNNGC 2 cut(s) 70, 74
CciI TCATGA 3 cut(s) 192, 214, 277
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 68
CviAII CATG 3 cut(s) 193, 215, 278
CviJI RGCY 6 cut(s) 15, 76, 113, 126, 171, 184
CviKI_1 RGCY 6 cut(s) 15, 76, 113, 126, 171, 184
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 119
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 3 cut(s) 196, 218, 281
FaiI YATR 9 cut(s) 99, 148, 194, 210, 216, 258, 267, 279, 309
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 3 cut(s) 192, 214, 277
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 3 cut(s) 196, 218, 281
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HpaII CCGG 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 5 cut(s) 28, 79, 193, 215, 278
HpyCH4V TGCA 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 3 cut(s) 196, 218, 281
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 25, 82, 107, 157, 236
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 318
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 8 cut(s) 16, 19, 31, 37, 40, 43, 46, 49
MfeI CAATTG 1 cut(s) 323
MluCI AATT 2 cut(s) 323, 339
Mly113I GGCGCC 1 cut(s) 66
MnlI CCTC 3 cut(s) 114, 200, 340
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 3 cut(s) 117, 351, 358
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 323
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 1 cut(s) 66
NdeII GATC 1 cut(s) 100
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 3 cut(s) 196, 218, 281
NlaIV GGNNCC 1 cut(s) 67
PagI TCATGA 3 cut(s) 192, 214, 277
PdiI GCCGGC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 170
PluTI GGCGCC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 3 cut(s) 117, 351, 358
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 1 cut(s) 100
SetI ASST 5 cut(s) 78, 91, 173, 192, 357
SfaNI GCATC 1 cut(s) 45
SfoI GGCGCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 2 cut(s) 323, 339
SspDI GGCGCC 1 cut(s) 65
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 323, 339
Tru1I TTAA 3 cut(s) 117, 351, 358
Tru9I TTAA 3 cut(s) 117, 351, 358
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 3 cut(s) 209, 254, 266
TspGWI ACGGA 1 cut(s) 322
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.