Rh1AG274500

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010609
Physical Location & Seq
Reverse (-)
50229068 .. 50242587
13520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG274500.1

Sequence Viewer

Length: 345 bp
ATGGAGGACAAAATCGTCTTTTCTGACCCTCGGGTACTTAAAGGTTTCGGTTATGATCCTCCATTAGCCCTTAAACAGGGCTTACTAAAGCTGAATAGCAAGGAGAGTTCAGTTGGTGTTCCTAAGGGTCCATCTAAGCTCTCTGGCCCACTTTCGGGTGCGAAGCTGAAGTCAGTAGATGAAGAAGTCAGAGACCAGGCACATCTTCATGTGTTGTTCAATAATGCTGAGGTGGATCCATATAGAAACGCAGATAAGGAGATTGTGGAGCAGCTTTGGGGAGGGAAGAAGAAGAGCAAAAAGTGGCTACAAACTAGTGTTGTCTGTGATGGGCTGTCGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

114

Amino Acids

12.53

Weight (kDa)

8.99

Isoelectric Point (pI)

19.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AclWI GGATC 3 cut(s) 50, 230, 243
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 76, 154, 155
AgsI TTSAA 1 cut(s) 220
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 4 cut(s) 91, 139, 166, 274
AluI AGCT 4 cut(s) 91, 139, 166, 274
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 3 cut(s) 50, 230, 243
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 271
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 2 cut(s) 128, 146
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 123
BamHI GGATCC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 139, 323
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 186
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 30
BmgT120I GGNCC 2 cut(s) 128, 146
BmiI GGNNCC 2 cut(s) 129, 237
BmrFI CCNGG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 154, 155
Bse21I CCTNAGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 29
BseLI CCNNNNNNNGG 3 cut(s) 76, 154, 155
BseMII CTCAG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 76, 154, 155
BsmAI GTCTC 1 cut(s) 186
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 30
Bsp143I GATC 2 cut(s) 55, 235
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 129, 237
BspPI GGATC 3 cut(s) 50, 230, 243
BspQI GCTCTTC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 55, 235
Bst2UI CCWGG 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 287
BstDEI CTNAG 3 cut(s) 123, 135, 228
BstENI CCTNNNNNAGG 1 cut(s) 74
BstKTI GATC 2 cut(s) 58, 238
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 2 cut(s) 55, 235
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 147
Cfr13I GGNCC 2 cut(s) 128, 146
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 209
CviJI RGCY 9 cut(s) 68, 81, 91, 139, 147, 166, 274, 307, 334
CviKI_1 RGCY 9 cut(s) 68, 81, 91, 139, 147, 166, 274, 307, 334
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 3 cut(s) 123, 135, 228
DpnI GATC 2 cut(s) 57, 237
DpnII GATC 2 cut(s) 55, 235
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 212
FaiI YATR 4 cut(s) 54, 210, 241, 243
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 25, 191
HpyF3I CTNAG 3 cut(s) 123, 135, 228
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 2 cut(s) 55, 235
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 4 cut(s) 62, 129, 182, 209
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 1 cut(s) 315
MalI GATC 2 cut(s) 57, 237
MboI GATC 2 cut(s) 55, 235
MboII GAAGA 5 cut(s) 194, 197, 298, 301, 304
MflI RGATCY 1 cut(s) 235
MnlI CCTC 4 cut(s) 39, 69, 223, 275
MseI TTAA 2 cut(s) 39, 72
MslI CAYNNNNRTG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
NdeII GATC 2 cut(s) 55, 235
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 129, 237
PciSI GCTCTTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 129, 237
PspPI GGNCC 2 cut(s) 128, 146
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 39, 72
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 2 cut(s) 55, 235
Sau96I GGNCC 2 cut(s) 128, 146
ScrFI CCNGG 1 cut(s) 197
SetI ASST 6 cut(s) 46, 93, 141, 168, 234, 276
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 207
SpeI ACTAGT 1 cut(s) 314
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 195
Tru1I TTAA 2 cut(s) 39, 72
Tru9I TTAA 2 cut(s) 39, 72
TseI GCWGC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 195, 197
VpaK11BI GGWCC 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 74
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.