Rh5CG382600

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010609
Physical Location & Seq
Forward (+)
50078923 .. 50094716
15794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG382600.1

Sequence Viewer

Length: 267 bp
ATGGGCAAAGTCCGGGAAACGCGTGGCCTGATAGTAGGGCCCCCAGGCTGCAGTGCGAAACTAAAGTCGATAGATGAGAAAGAGAGAGACCAGGCACATCTTCATGTGCTGTCCAATAATGTTGAGGTGGATCCATATAAGAACGCCCATAAAAAGATTGTCGAGGAGCTGTACGCTGGGAAAAAGAAGAGTAAAAAATGGCTAAGAAGTGAGCACAATCGTACTTTTGCCGATTGGTTTCAATCCAAGCAAATCTGTTATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

88

Amino Acids

10.22

Weight (kDa)

9.45

Isoelectric Point (pI)

27.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 22
AclWI GGATC 2 cut(s) 125, 138
AfaI GTAC 2 cut(s) 173, 223
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 2 cut(s) 43, 90
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 2 cut(s) 125, 138
AoxI GGCC 2 cut(s) 25, 38
ApaI GGGCCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 48
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 2 cut(s) 38, 39
AsuC2I CCSGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 42
BamHI GGATCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 45, 92
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 3 cut(s) 14, 45, 92
BmgT120I GGNCC 2 cut(s) 38, 39
BmiI GGNNCC 3 cut(s) 40, 41, 132
BmrFI CCNGG 3 cut(s) 14, 45, 92
BpuMI CCSGG 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 45, 92
BseDI CCNNGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 27, 40
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 2 cut(s) 27, 40
Bso31I GGTCTC 1 cut(s) 81
Bsp120I GGGCCC 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 42, 216
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 2 cut(s) 27, 40
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 40, 41, 132
BspMAI CTGCAG 1 cut(s) 53
BspPI GGATC 2 cut(s) 125, 138
BspTNI GGTCTC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 45, 92
Bst6I CTCTTC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 203
BstFNI CGCG 1 cut(s) 22
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 45, 92
BstSCI CCNGG 3 cut(s) 12, 43, 90
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 42
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 2 cut(s) 27, 40
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 38, 39
Csp6I GTAC 2 cut(s) 172, 222
CviAII CATG 1 cut(s) 104
CviJI RGCY 5 cut(s) 27, 40, 48, 169, 202
CviKI_1 RGCY 5 cut(s) 27, 40, 48, 169, 202
CviQI GTAC 2 cut(s) 172, 222
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 81
EcoO109I RGGNCCY 2 cut(s) 38, 39
EcoRII CCWGG 2 cut(s) 43, 90
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 1 cut(s) 107
FaiI YATR 5 cut(s) 105, 136, 138, 150, 261
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 49
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 2 cut(s) 27, 40
HapII CCGG 1 cut(s) 13
Hin1II CATG 1 cut(s) 107
HpaII CCGG 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 26, 30, 41, 57, 77, 104, 162
Lsp1109I GCAGC 1 cut(s) 35
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 92, 199
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 2 cut(s) 42, 216
MluI ACGCGT 1 cut(s) 20
MnlI CCTC 2 cut(s) 118, 157
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 3 cut(s) 14, 45, 92
MvaI CCWGG 2 cut(s) 45, 92
MvnI CGCG 1 cut(s) 22
NciI CCSGG 1 cut(s) 14
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 3 cut(s) 40, 41, 132
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 43, 90
PspFI CCCAGC 1 cut(s) 176
PspGI CCWGG 2 cut(s) 43, 90
PspN4I GGNNCC 3 cut(s) 40, 41, 132
PspOMI GGGCCC 1 cut(s) 38
PspPI GGNCC 2 cut(s) 38, 39
PstI CTGCAG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 173, 223
RsaNI GTAC 2 cut(s) 172, 222
RseI CAYNNNNRTG 1 cut(s) 102
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 38, 39
ScrFI CCNGG 3 cut(s) 14, 45, 92
SduI GDGCHC 2 cut(s) 42, 216
SetI ASST 2 cut(s) 129, 171
SfcI CTRYAG 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 12, 43, 90
TaqI TCGA 2 cut(s) 68, 162
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.