Rh3BG311900

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010609
Physical Location & Seq
Forward (+)
31664943 .. 31683031
18089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG311900.1

Sequence Viewer

Length: 483 bp
ATGTGTCAATCAGCCTTCAATGAAGAAGGTTGTATAGCCGAGAGTTATGTTGGAGAAGAATCTGTGGAGTTTTGCTCCGAGTTTGTTCAACGGTGTAATCCAATTGGAGTTCCTAAGGATCAAAGTAAGCTCTGTGGCCCACTTTCTACTGCAAAACTTAAGTGCATTGATGAGAAAGAGAGAGATCAGGCACATCTTCATGTGTTGTCCAATAATGCTGAGGTGGATCCGTATAAGATCGCACATAAAAACATTGTAGAGCAGCTGTATGCTGGGAAAAAGAAGAGTAAACAGTGGCTAATTAGTGAGCACAATCGTTCTTTTGCTGATTGGTTTGAAGCCAAGACCAAGACAAAACCAAAATATGTATATAAAATAAGGCATAAAGAAGATGAAAATAAAGGCCTGCGGTGGTCTGTCAAAACAAAGAGGAAGGCTTATTTAAACATATCTTCTTATTATGCAAAGGGTGCTGGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

160

Amino Acids

18.37

Weight (kDa)

9.03

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 409
AclWI GGATC 3 cut(s) 126, 221, 234
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 19, 89, 338
AluBI AGCT 2 cut(s) 130, 265
AluI AGCT 2 cut(s) 130, 265
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 3 cut(s) 126, 221, 234
AoxI GGCC 2 cut(s) 136, 403
ApeKI GCWGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 114
BamHI GGATCC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 59, 91
Bpu10I CCTNAGC 1 cut(s) 219
Bse21I CCTNAGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 2 cut(s) 138, 405
BsiHKAI GWGCWC 1 cut(s) 312
BsnI GGCC 2 cut(s) 138, 405
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 4 cut(s) 118, 184, 226, 237
BspACI CCGC 1 cut(s) 409
BspANI GGCC 2 cut(s) 138, 405
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 3 cut(s) 126, 221, 234
BspTI CTTAAG 1 cut(s) 158
BssMI GATC 4 cut(s) 118, 184, 226, 237
Bst4CI ACNGT 2 cut(s) 93, 294
Bst6I CTCTTC 1 cut(s) 278
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 2 cut(s) 114, 219
BstKTI GATC 4 cut(s) 121, 187, 229, 240
BstMBI GATC 4 cut(s) 118, 184, 226, 237
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstV1I GCAGC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 2 cut(s) 138, 405
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 137
CviAII CATG 2 cut(s) 200, 480
CviJI RGCY 9 cut(s) 14, 38, 130, 138, 265, 298, 341, 405, 437
CviKI_1 RGCY 9 cut(s) 14, 38, 130, 138, 265, 298, 341, 405, 437
DdeI CTNAG 2 cut(s) 114, 219
DpnI GATC 4 cut(s) 120, 186, 228, 239
DpnII GATC 4 cut(s) 118, 184, 226, 237
DraI TTTAAA 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 114
FaeI CATG 2 cut(s) 203, 483
FatI CATG 2 cut(s) 199, 479
Fnu4HI GCNGC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 2 cut(s) 138, 405
Hin1II CATG 2 cut(s) 203, 483
HinfI GANTC 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 3 cut(s) 20, 25, 427
HpyCH4III ACNGT 2 cut(s) 93, 294
HpyCH4V TGCA 3 cut(s) 152, 165, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 2 cut(s) 114, 219
Hsp92II CATG 2 cut(s) 203, 483
Kzo9I GATC 4 cut(s) 118, 184, 226, 237
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 4 cut(s) 173, 258, 419, 459
Lsp1109I GCAGC 1 cut(s) 274
MalI GATC 4 cut(s) 120, 186, 228, 239
MboI GATC 4 cut(s) 118, 184, 226, 237
MboII GAAGA 6 cut(s) 35, 68, 188, 295, 401, 444
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 102, 300
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 2 cut(s) 214, 423
MseI TTAA 2 cut(s) 159, 443
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 265
MspCI CTTAAG 1 cut(s) 158
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeII GATC 4 cut(s) 118, 184, 226, 237
NlaIII CATG 2 cut(s) 203, 483
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 64
PceI AGGCCT 1 cut(s) 405
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 159, 443
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 4 cut(s) 118, 184, 226, 237
Sau96I GGNCC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 312
SetI ASST 4 cut(s) 31, 132, 225, 267
SgeI CNNG 8 cut(s) 52, 91, 200, 212, 285, 355, 361, 418
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 102, 300
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 1 cut(s) 409
StuI AGGCCT 1 cut(s) 405
TaaI ACNGT 2 cut(s) 93, 294
TasI AATT 2 cut(s) 102, 300
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 159, 443
Tru9I TTAA 2 cut(s) 159, 443
TscAI CASTG 1 cut(s) 299
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 36, 188, 408
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.