Rh6BG243100

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010609
Physical Location & Seq
Forward (+)
45299862 .. 45324247
24386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG243100.1

Sequence Viewer

Length: 294 bp
ATGATACCAAGTTGGTTGGAAGGAGCAGCAGGTTACGAGCGGGTCTTCAAGGCAAAACTAGTGTTGAGTAGTGAAATCCAACGATTCAGTGCGAAACTAAAGTCGATAGATGAGAAAGAGAGAGACCAGGCACATCTTCATGTGCTGTCCAATAATGCTGAGGTGGATCCATATAAGAACGCCCATAAAAAGATTGTCGAGGAGCTGTACGCTGGGAAAAAGAAGAGTAAAAAATGGCTAAGAAGTGAGCACAATCGTACTTTTGCCGATTGGTTTCAATCCAAGGACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

97

Amino Acids

11.34

Weight (kDa)

9.49

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 20
AccBSI CCGCTC 1 cut(s) 40
AciI CCGC 1 cut(s) 40
AclWI GGATC 2 cut(s) 161, 174
AfaI GTAC 2 cut(s) 209, 259
AgsI TTSAA 2 cut(s) 49, 278
AhlI ACTAGT 1 cut(s) 58
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 2 cut(s) 161, 174
ApeKI GCWGC 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
BamHI GGATCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 117
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 1 cut(s) 59
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 117
Bso31I GGTCTC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 168
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 2 cut(s) 161, 174
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 159, 239
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 94
BveI ACCTGC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 208, 258
CviAII CATG 1 cut(s) 140
CviJI RGCY 2 cut(s) 205, 238
CviKI_1 RGCY 2 cut(s) 205, 238
CviQI GTAC 2 cut(s) 208, 258
DdeI CTNAG 2 cut(s) 159, 239
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 143
FaiI YATR 6 cut(s) 141, 172, 174, 186, 290, 292
FatI CATG 1 cut(s) 139
FauI CCCGC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 216
Hin1II CATG 1 cut(s) 143
HinfI GANTC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 14
HpyF3I CTNAG 2 cut(s) 159, 239
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 23, 202
LpnPI CCDG 4 cut(s) 15, 113, 140, 198
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 168
MbiI CCGCTC 1 cut(s) 40
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 37, 128, 235
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 2 cut(s) 154, 193
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 2 cut(s) 209, 259
RsaNI GTAC 2 cut(s) 208, 258
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 252
SetI ASST 3 cut(s) 34, 165, 207
SmiMI CAYNNNNRTG 1 cut(s) 138
SpeI ACTAGT 1 cut(s) 58
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 2 cut(s) 104, 198
TfiI GAWTC 1 cut(s) 84
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 94
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.